Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20232
         (545 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    24   2.8  
AY146743-1|AAO12103.1|  192|Anopheles gambiae odorant-binding pr...    23   8.7  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   8.7  

>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +1

Query: 433  RSSKGTSFSNSAELQKHCRTNQRAALLSNLKGEG 534
            ++++GT  +N  +  +  R  ++++LLS  + EG
Sbjct: 1070 KATQGTGTANGGDAARDVRERRKSSLLSTQEREG 1103


>AY146743-1|AAO12103.1|  192|Anopheles gambiae odorant-binding
           protein AgamOBP11 protein.
          Length = 192

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 345 VIRAAKCATRSIKPSKYSLSKAAKVSYNCLIEVRAVSHIIPQSF 214
           +I AA CA   +    Y+  +AA +++  ++ V  V H    +F
Sbjct: 9   LIVAAGCANAFMYKHPYNHHQAAVLAHEPVVPVEFVKHTTSPAF 52


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +2

Query: 338 LITDFFEKHKPELQEFTNVITDIFKDLTRIIVAQVKELPSLIA 466
           ++TD F  H P     T+ +     D  R+   +++E+ + +A
Sbjct: 406 IVTDLFPTHPPVYWPETDDVDSGASDFDRVTPEELQEIAAHMA 448


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,815
Number of Sequences: 2352
Number of extensions: 10391
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)