Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20232
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024831-10|AAK72074.2| 521|Caenorhabditis elegans Hypothetical... 30 1.2
Z50874-1|CAA90763.1| 377|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 28 5.0
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 27 6.7
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 27 6.7
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 27 6.7
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 8.8
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 8.8
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 8.8
>AC024831-10|AAK72074.2| 521|Caenorhabditis elegans Hypothetical
protein Y55F3C.3a protein.
Length = 521
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 18 FKKIDEDFRREWSKFYQEVTDDKTLKELSHAFNEIIQFFA 137
F +++ + RR+W+ +Y E D+ + + F+ I F+A
Sbjct: 96 FVRMNHEHRRQWADWYFEEQDEYFFERVPRYFDPIYDFYA 135
>Z50874-1|CAA90763.1| 377|Caenorhabditis elegans Hypothetical
protein R10E4.1 protein.
Length = 377
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 60 FYQEVTDDKTLKELSHAFNEIIQFFAKIF 146
FY E+ +DK + E+ F EII F I+
Sbjct: 179 FYGELGEDKEIYEMKEKFREIITFLRCIY 207
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 266 YETLAALLKEYLDGLIDLVAHFAALITDFFEKHKPELQEFTNVITDIFKDLTRIIV 433
++ LA LL L+G +DLV A+ +TD + + + N I ++ R ++
Sbjct: 551 FDPLALLLDAALEGELDLVRSSASKLTDVSQANDEGITALHNAICAGHYEIVRFLI 606
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 182 EHH*HVRRDSEKDCGII*ETARTSMRQLYETLAALLKEYLD 304
EH VRR++EKD +T + M QL T+ L KE D
Sbjct: 505 EHIDQVRRNAEKDAMEQQKTYQNEMTQLKATIENLQKELSD 545
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +3
Query: 3 KTAPYFKKIDEDFRREWSKFYQEVTDDKTLKELSHAFNEIIQFFAKIFDTIYKGTEPIVE 182
K A ++ ++ + R EW KFY+ + T K + +E +F + D + +
Sbjct: 59 KVAVFYNELPAEKRAEWDKFYKTHCFEWTAK--AQGADEETEFQKNLADNDVEKVRQRIG 116
Query: 183 SIINTYVETVKKIAELYE 236
+ E +K E++E
Sbjct: 117 ELKKDLDEKARKNVEMWE 134
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c
protein.
Length = 1198
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +3
Query: 3 KTAPYFKKIDEDFRREWSKFYQEVTDDKTLKELSHAFNEIIQFFAKIFDTIYKGTEPIVE 182
K A ++ ++ + R EW KFY+ + T K + +E +F + D + +
Sbjct: 65 KVAVFYNELPAEKRAEWDKFYKTHCFEWTAK--AQGADEETEFQKNLADNDVEKVRQRIG 122
Query: 183 SIINTYVETVKKIAELYE 236
+ E +K E++E
Sbjct: 123 ELKKDLDEKARKNVEMWE 140
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +3
Query: 3 KTAPYFKKIDEDFRREWSKFYQEVTDDKTLKELSHAFNEIIQFFAKIFDTIYKGTEPIVE 182
K A ++ ++ + R EW KFY+ + T K + +E +F + D + +
Sbjct: 59 KVAVFYNELPAEKRAEWDKFYKTHCFEWTAK--AQGADEETEFQKNLADNDVEKVRQRIG 116
Query: 183 SIINTYVETVKKIAELYE 236
+ E +K E++E
Sbjct: 117 ELKKDLDEKARKNVEMWE 134
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 400 RYIQRSNPNNCRSSKGTSFSNSAELQKHCRTNQRAALLSNLKGE 531
R+ + N+ SS S ++ EL K C+ RAAL ++ GE
Sbjct: 2199 RFCMTFHQNSGSSSTSQSGNHGVELTKKCQLLLRAALRPSMWGE 2242
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 400 RYIQRSNPNNCRSSKGTSFSNSAELQKHCRTNQRAALLSNLKGE 531
R+ + N+ SS S ++ EL K C+ RAAL ++ GE
Sbjct: 2205 RFCMTFHQNSGSSSTSQSGNHGVELTKKCQLLLRAALRPSMWGE 2248
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 400 RYIQRSNPNNCRSSKGTSFSNSAELQKHCRTNQRAALLSNLKGE 531
R+ + N+ SS S ++ EL K C+ RAAL ++ GE
Sbjct: 2205 RFCMTFHQNSGSSSTSQSGNHGVELTKKCQLLLRAALRPSMWGE 2248
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 400 RYIQRSNPNNCRSSKGTSFSNSAELQKHCRTNQRAALLSNLKGE 531
R+ + N+ SS S ++ EL K C+ RAAL ++ GE
Sbjct: 2205 RFCMTFHQNSGSSSTSQSGNHGVELTKKCQLLLRAALRPSMWGE 2248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,735,513
Number of Sequences: 27780
Number of extensions: 232407
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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