Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20232
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family...    29   2.0  
At5g61650.1 68418.m07735 cyclin family protein similar to cyclin...    29   2.7  
At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At4g12850.1 68417.m02013 far-red impaired responsive family prot...    28   4.7  
At3g58120.1 68416.m06481 bZIP transcription factor family protei...    27   6.2  
At3g45330.1 68416.m04894 lectin protein kinase family protein co...    27   6.2  
At1g74860.1 68414.m08676 expressed protein                             27   8.2  

>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 554

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
 Frame = +3

Query: 3   KTAPYFKKIDEDFRREWSKFYQEVTD-----DKTLKELSHAFNEIIQFFAKIFDTIYKGT 167
           K +PYF+KI+ED R   +   +  TD     +K + EL    + I     K+ D      
Sbjct: 353 KKSPYFQKIEEDVRMYMTSINELKTDITKFKNKDITELQKFHHRIESVLEKLEDETQVLA 412

Query: 168 EPIVESIINTYVETVKKIAELYEK 239
               E   +  +E ++  A LY K
Sbjct: 413 R--CEGFPHKKLEAIRMAAALYSK 434


>At5g61650.1 68418.m07735 cyclin family protein similar to cyclin 2
           [Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
           cruzi] GI:12005317; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 219

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 411 LNISVITFVNSCSSGLCFSKKSVIRAAKCATRSIKPSKYSLSKAAKV 271
           LN++V TF N C    CF ++ +    K  +  ++PS + +S   K+
Sbjct: 155 LNVTVSTFNNYC----CFLQREMAMLMKMKSLFLEPSSFKISSKTKL 197


>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 394 DHRYIQRSNPNNCRSSKGTSFSNSAELQKHCRT 492
           DH+Y+  +N    RS K T F+ ++ ++ HC++
Sbjct: 52  DHKYLDYANQILDRSEKPTLFALNSMIRAHCKS 84


>At4g12850.1 68417.m02013 far-red impaired responsive family protein
           / FAR1 family protein weak similarity to far-red
           impaired response protein [Arabidopsis thaliana]
           GI:5764395; contains Pfam profile PF03101: FAR1 family
          Length = 183

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 209 CLDVRVNDALHNRLSTFVDGIEYLSEELDYFVESM 105
           C D R+ D   +RL +F+D +E+ +EEL   V  +
Sbjct: 135 CQD-RLCDVYRDRLVSFIDNVEHYTEELSLKVRDI 168


>At3g58120.1 68416.m06481 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
           ;supported by cDNA gi|15100054|gb|AF401300.1|AF401300
          Length = 329

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 394 DHRYIQRSNPNNCRSSKGTSFSNSAELQKHCRTNQRAALLSNLKGEG 534
           DH +   +N  N  ++ G +++ S E+Q  C+T  +    +N    G
Sbjct: 148 DHDHHMDNNVANQNNAAGNNYNESDEVQSQCKTEPQDGPSANQNSGG 194


>At3g45330.1 68416.m04894 lectin protein kinase family protein
           contains Serine/Threonine protein kinases active-site
           signature, Prosite:PS00108; contains Pfam profiles
           PF00069: Protein kinase domain, PF00139: Legume lectins
           beta domain, PF00138: Legume lectins alpha domain
          Length = 682

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 15  YFKKIDEDFRREWSKFYQEVTDD-KTLKELSHAFNEIIQFFAKIFDTIYKGTEPIVESI 188
           Y +K   + R  W K Y  +    K+L + +  FN+  +     F  +YKGT PI+  I
Sbjct: 315 YRRKKYAEVREPWEKPYGPLRYSYKSLYKATRGFNKDGRLGRGGFGEVYKGTLPILGDI 373


>At1g74860.1 68414.m08676 expressed protein
          Length = 400

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 269 ETLAALLKEYLDGLIDLVAHFAALITDFFEKHKPELQEFTNVITDIFKDLTRI 427
           ETLAAL + Y D +++     AA +    +K +   QE   V  +    L R+
Sbjct: 5   ETLAALKRAYADTILNTTKEAAARVMVSEKKARRYQQELVTVRNEALHTLVRL 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,645
Number of Sequences: 28952
Number of extensions: 211907
Number of successful extensions: 736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)