Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20231
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 219 2e-58
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 133 2e-32
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 122 5e-29
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 120 2e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 79 7e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 74 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 63 4e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 56 3e-09
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 37 0.003
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 35 0.012
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 30 0.26
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.34
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.78
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.4
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.2
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 5.5
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.3
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 9.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 219 bits (536), Expect = 2e-58
Identities = 100/113 (88%), Positives = 104/113 (92%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FET
Sbjct: 67 LKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFET 126
Query: 435 FNTPAMYVAIQAVLSLYASGPYHRYVLDSGDGVSHTVPIYEGYALPHAILRLD 593
FN PA YVAIQAVLSLYASG VLDSGDGV+HTVPIYEGYALPHAI+RLD
Sbjct: 127 FNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLD 179
Score = 135 bits (327), Expect = 5e-33
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +1
Query: 61 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 241 RGILTSNTP 267
RGILT P
Sbjct: 62 RGILTLKYP 70
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 602 GRDLTDYLMKILTERGY 652
GRDLTDYLMKIL ERGY
Sbjct: 182 GRDLTDYLMKILMERGY 198
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 133 bits (321), Expect = 2e-32
Identities = 58/113 (51%), Positives = 82/113 (72%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
+KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE
Sbjct: 67 VKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFER 126
Query: 435 FNTPAMYVAIQAVLSLYASGPYHRYVLDSGDGVSHTVPIYEGYALPHAILRLD 593
+ +YVAIQAVLSLYA G V+DSGDGV+H VP+YE L H + RLD
Sbjct: 127 YGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLD 179
Score = 58.8 bits (136), Expect = 6e-10
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +1
Query: 67 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 240
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 241 RGILTSNTP 267
R +L P
Sbjct: 62 RSLLQVKYP 70
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 122 bits (294), Expect = 5e-29
Identities = 54/116 (46%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 431
++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +E
Sbjct: 71 IQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYE 130
Query: 432 TFNTPAMYVAIQAVLSLYASGPYHRYVLDSGDGVSHTVPIYEGYALPHAILRLDFG 599
T N PA+ ++Q VL+LYAS VL+ GDG++H+VPIY+G+++P AI + + G
Sbjct: 131 TLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIG 186
Score = 77.0 bits (181), Expect = 2e-15
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = +1
Query: 79 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTS 258
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 259 NTP 267
P
Sbjct: 72 QRP 74
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 120 bits (288), Expect = 2e-28
Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+
Sbjct: 90 LDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFES 149
Query: 435 FNTPAMYVAIQAVLSLYASGPYHRY--------VLDSGDGVSHTVPIYEGYALPHAI 581
FN +Y+A+QAVL+L AS + V+DSGDGV+H +P+ EGY + +I
Sbjct: 150 FNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSI 206
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 79 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 228
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 78.6 bits (185), Expect = 7e-16
Identities = 39/106 (36%), Positives = 57/106 (53%)
Frame = +3
Query: 252 DLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 431
++K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE
Sbjct: 64 EIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFE 123
Query: 432 TFNTPAMYVAIQAVLSLYASGPYHRYVLDSGDGVSHTVPIYEGYAL 569
+ PA Y+A Q + +ASG ++D G S IY+G+ L
Sbjct: 124 SLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 64 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 165
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 74.1 bits (174), Expect = 2e-14
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Frame = +3
Query: 264 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 443
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 444 PAMYVAIQAVLSLY--ASGPYHRYVLDSGDGVSHTVPIYEGYALPHAILRLDFG 599
P++ I + S Y VL+ G+ SH +P+ G + R+ +G
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWG 198
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 79 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 174
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.9 bits (146), Expect = 4e-11
Identities = 28/112 (25%), Positives = 57/112 (50%)
Frame = +3
Query: 252 DLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 431
++K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE
Sbjct: 67 EVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFE 126
Query: 432 TFNTPAMYVAIQAVLSLYASGPYHRYVLDSGDGVSHTVPIYEGYALPHAILR 587
+ PA Y+ QAV +A+ ++D G + P+ +G + I +
Sbjct: 127 QLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFK 178
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 64 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 56.4 bits (130), Expect = 3e-09
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Frame = +3
Query: 249 PDLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 416
P+ PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 417 QIMFETFNTPAMYVAIQAVLSLYASGPYHRYVLDSGDGVSHTVPIYEGYALPHAILRLDF 596
Q FE P +A + ++ LYA G H V+D G + PI +G + A +L
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPL 226
Query: 597 G 599
G
Sbjct: 227 G 227
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 124 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTSNTPSNTESSL 288
G+ PRA F ++ P H G+++ M KD G+E S +G + TP N S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTPENEISEV 554
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 324 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGP 497
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + + A+ L
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
Query: 498 YHRY 509
H Y
Sbjct: 1459 NHAY 1462
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 30.3 bits (65), Expect = 0.26
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Frame = +3
Query: 270 EHGIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNT 443
E G + +W +W N + P ++ +LLT+ + Q++FE F
Sbjct: 64 EKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQF 123
Query: 444 PAMYVAIQAVLSLYASGPYHR--------------YVLDSGDGVSHTVPIYEGYALPHAI 581
A A L + G + V+DSG +H +P+ + A+
Sbjct: 124 DAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQAV 183
Query: 582 LRLDFG 599
R+D G
Sbjct: 184 KRVDVG 189
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.34
Identities = 26/110 (23%), Positives = 44/110 (40%)
Frame = +1
Query: 253 TSNTPSNTESSLTGMTWRRFGIIPSTMSSVSPPRNIPSFSXXXXXXXXXXXXXXXXXCSK 432
TS+T + + T T +PST +S + +IP S
Sbjct: 310 TSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTST---SS 366
Query: 433 HSTRPPCTSPSKPCSRCTRPVRTTGTCWTPATVSPTPYPSTRDTHSLTPS 582
ST PP S S + + + T+ +C T ++ PT +T T ++ P+
Sbjct: 367 TSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 416
Score = 29.5 bits (63), Expect = 0.45
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 221 PTYESFCPM-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 60
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 484 TRPVRTTGTCWTPATVSPTPYPSTRDT 564
T P TT + TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.8
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +1
Query: 247 ILTSNTPSNTESSLTGMTWRRFGIIPST-MSSVSPPRNIPSFSXXXXXXXXXXXXXXXXX 423
+ +S++PS++ SS + IPST SS S ++ S S
Sbjct: 216 VSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISS 275
Query: 424 CSKHSTRPPCTSP--SKPCSRCTRPVRTTGTCWTPATVSPTPYPSTRDTHSLTPS 582
S S+ P TS S S + P T+ T + ++ S + + ST + S++ S
Sbjct: 276 SSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI-SSSSSSSSSFSSTLSSSSMSSS 329
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 469 PCSRCTRPVRTTGTCWTPATVSPTPYPSTRDTHSLTPSCV 588
P SR T+P+ + + +P VSP PST ++ + V
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFV 301
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 532 SPTPYPSTRDTHSLTPSCVWTLARSRPHRLPHEDPH 639
SP+P P++ D S T W+ S + P E P+
Sbjct: 244 SPSPIPNSNDNDSQTRRSSWSSIASAFNDFPEEFPN 279
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 530 CLPHRTHLRGIRTPSRHPASGLWPGRDL 613
CL H+ HL+G R +G G+D+
Sbjct: 510 CLKHKFHLKGFRKNQLEAINGTLSGKDV 537
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 366 LLTEAPLNPKANREKMTQIMFETFN 440
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 224 SPTYESFC--PMPTITP*WRGLPTIEGNTARGASSPAKPAL 108
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 118 NRPCTYRSHCLLPTRQLP 65
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.3
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 248 IPLLLCASSPTYESFCPMPTI-TP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAA 72
IP L ++P +F P P++ +P + T +TA ++SP L P + TN +
Sbjct: 363 IPSPLQNTNPAPSTF-PNPSVASPAFPNSSTSNPSTAPASASPLASTLK-PSTANDTNGS 420
Query: 71 TSSS 60
+SSS
Sbjct: 421 SSSS 424
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 520 PATVSPTPYPSTRDTHSLTPSCVWTLARSRPHRLPHEDP 636
P V+ P+P T T + TPS ++ S+ P+ P
Sbjct: 243 PDQVALPPFPDTNSTLTYTPSNSQSIYSSQSQPSPYSRP 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,141
Number of Sequences: 5004
Number of extensions: 64384
Number of successful extensions: 223
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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