Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20231
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 336  LRVAPEEHPVLLTEAPLNPKANREKM 413
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 198  HADHHTLMAGPSDDRGEYGARSIISCETG 112
            H   H      +DD+  +  R ++SC +G
Sbjct: 1686 HCTIHRTQVKETDDKICFTMRPVVSCASG 1714


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 229 PRLLRTSLSVPCRPSHPDGGAFRRSRGIRREEHHLLRNRPCTYRSHC 89
           PR++    +V CR S P G A   S    R E  L     C Y +HC
Sbjct: 704 PRIMDLD-NVMCRTSGPRGVAI-VSASTARSEQFL-----CRYEAHC 743


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 515 GLRRRCLPHRTHLRGIRTPSRHPASGLWPGRDLTDYLMKILT 640
           G+    L  R H  GI TP +   +  W    L + L  + T
Sbjct: 438 GIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRT 479


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 100 GMCKAGFAGD 129
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,353
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)