Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20230
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 174 5e-44
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 174 5e-44
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 156 1e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 152 2e-37
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 104 5e-23
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 104 5e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 97 1e-20
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 64 8e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 64 8e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 63 2e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 63 2e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 63 2e-10
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 36 0.032
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 34 0.075
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.23
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.23
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 32 0.30
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.30
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.70
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.70
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.92
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 0.92
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.92
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.6
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.1
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.7
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.5
U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical p... 28 6.5
AL008867-2|CAE17750.1| 763|Caenorhabditis elegans Hypothetical ... 28 6.5
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 8.6
U46673-3|AAC48151.1| 506|Caenorhabditis elegans Aldehyde dehydr... 27 8.6
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 8.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 174 bits (423), Expect = 5e-44
Identities = 82/96 (85%), Positives = 87/96 (90%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 435 QTREHALLAFTLGVKQLIGRSKQNGSTEPPYSEPRF 542
QTREHALLA TLGVKQLI + STEPP+SE RF
Sbjct: 132 QTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARF 167
Score = 152 bits (368), Expect = 2e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERGI 255
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 541 FEEIKKEVSSYIKKIGLQPTCCRF 612
F EI EVS +IKKIG P F
Sbjct: 167 FTEITNEVSGFIKKIGYNPKAVPF 190
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 578 RRLGYNPPAVAFVPI 622
+++GYNP AV FVPI
Sbjct: 179 KKIGYNPKAVPFVPI 193
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 174 bits (423), Expect = 5e-44
Identities = 82/96 (85%), Positives = 87/96 (90%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 435 QTREHALLAFTLGVKQLIGRSKQNGSTEPPYSEPRF 542
QTREHALLA TLGVKQLI + STEPP+SE RF
Sbjct: 132 QTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARF 167
Score = 152 bits (368), Expect = 2e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERGI 255
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 541 FEEIKKEVSSYIKKIGLQPTCCRF 612
F EI EVS +IKKIG P F
Sbjct: 167 FTEITNEVSGFIKKIGYNPKAVPF 190
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 578 RRLGYNPPAVAFVPI 622
+++GYNP AV FVPI
Sbjct: 179 KKIGYNPKAVPFVPI 193
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 156 bits (379), Expect = 1e-38
Identities = 72/78 (92%), Positives = 76/78 (97%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 435 QTREHALLAFTLGVKQLI 488
QTREHALLA TLGVKQL+
Sbjct: 132 QTREHALLAQTLGVKQLV 149
Score = 152 bits (368), Expect = 2e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERGI 255
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 152 bits (368), Expect = 2e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERERGI 255
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 98.3 bits (234), Expect(2) = 3e-22
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 392
TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 541 FEEIKKEVSSYIKKIGLQPTCCRF 612
F EI EVS +IKKIG P F
Sbjct: 133 FTEITNEVSGFIKKIGYNPKAVPF 156
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 578 RRLGYNPPAVAFVPI 622
+++GYNP AV FVPI
Sbjct: 145 KKIGYNPKAVPFVPI 159
Score = 24.2 bits (50), Expect(2) = 3e-22
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 510 STEPPYSEPRF 542
STEPP+SE RF
Sbjct: 123 STEPPFSEARF 133
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAER 243
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 104 bits (250), Expect = 5e-23
Identities = 49/78 (62%), Positives = 58/78 (74%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 235 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 294
Query: 435 QTREHALLAFTLGVKQLI 488
QT+EHALL +LGV QLI
Sbjct: 295 QTKEHALLLRSLGVTQLI 312
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 232 KAERERGI 255
+ ERERG+
Sbjct: 227 EEERERGV 234
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 104 bits (250), Expect = 5e-23
Identities = 49/78 (62%), Positives = 58/78 (74%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 253 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 312
Query: 435 QTREHALLAFTLGVKQLI 488
QT+EHALL +LGV QLI
Sbjct: 313 QTKEHALLLRSLGVTQLI 330
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 232 KAERERGI 255
+ ERERG+
Sbjct: 245 EEERERGV 252
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/96 (45%), Positives = 61/96 (63%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 435 QTREHALLAFTLGVKQLIGRSKQNGSTEPPYSEPRF 542
QTREH++L T GVK L+ + + E RF
Sbjct: 234 QTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERF 269
Score = 82.2 bits (194), Expect = 3e-16
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +1
Query: 46 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 225
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 226 KLKAERERG 252
ERE+G
Sbjct: 164 TNDEEREKG 172
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 64.1 bits (149), Expect = 8e-11
Identities = 36/77 (46%), Positives = 47/77 (61%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 435 QTREHALLAFTLGVKQL 485
QT+EH +LA +GVK +
Sbjct: 148 QTKEHLILAKQVGVKNM 164
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 64.1 bits (149), Expect = 8e-11
Identities = 36/77 (46%), Positives = 47/77 (61%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 435 QTREHALLAFTLGVKQL 485
QT+EH +LA +GVK +
Sbjct: 148 QTKEHLILAKQVGVKNM 164
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 151
Query: 435 QTREHALLAFTLGV 476
QTREH LLA +GV
Sbjct: 152 QTREHLLLARQVGV 165
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152
Query: 435 QTREHALLAFTLGV 476
QTREH LLA +GV
Sbjct: 153 QTREHLLLARQVGV 166
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 434
TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152
Query: 435 QTREHALLAFTLGV 476
QTREH LLA +GV
Sbjct: 153 QTREHLLLARQVGV 166
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 35.5 bits (78), Expect = 0.032
Identities = 27/63 (42%), Positives = 32/63 (50%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 247 RGI 255
RGI
Sbjct: 74 RGI 76
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
VT +D PGH F G AD VL+VAA G
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGID 147
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 479
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNVPFI 168
Query: 480 QLIGRSKQNGST 515
+ + +NG+T
Sbjct: 169 CFVNKMDRNGAT 180
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 461
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLA 120
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 183
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
Y + +ID PGH DF + + D +L+VAA G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 297 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 392
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 332 ISVSRSIND-GNIVLASFELPESNIDCIPR 246
+S ++I+D GNI+ +F P DCIPR
Sbjct: 197 VSSQQAIHDLGNILKLNFSYPPETRDCIPR 226
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 300 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 395
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical
protein C33F10.2 protein.
Length = 826
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 499 NKMVPLNHHTVSPDFEEIKKEVSSYIKKIGLQPTCCRFRAHFLGW 633
N+M+ + H +EI K Y K I P C FRAH W
Sbjct: 659 NEMIIIIHDQPDLSIDEIIKNSRGYEKLI---PPSCTFRAHASPW 700
>AL008867-2|CAE17750.1| 763|Caenorhabditis elegans Hypothetical
protein C46E1.3 protein.
Length = 763
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 447 HALLAFTLGVKQLIGRSKQNGSTEPPYSEP 536
H+L +F L+G S+ +GS+ PP S P
Sbjct: 57 HSLRSFIEETPILLGSSEHSGSSSPPRSSP 86
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 389
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U46673-3|AAC48151.1| 506|Caenorhabditis elegans Aldehyde
dehydrogenase protein 10 protein.
Length = 506
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 566 DTSFLISSKSGLTVWWFSGTILFTPTDELFDTEGESEQGMLTGLTVL-RDTSFEFTG 399
DT+ + ++ T + S T+ + +DEL +T E G + T L RD S F G
Sbjct: 418 DTAEEVIERANSTPYGLSATVWSSDSDELLNTANELRAGTVWCNTWLARDLSMPFGG 474
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -3
Query: 485 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 327
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 326 VSRSINDGNI 297
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,154,705
Number of Sequences: 27780
Number of extensions: 315448
Number of successful extensions: 954
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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