Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20228
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 146 1e-36
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 50 3e-07
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 47 1e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 47 1e-06
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 46 3e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 44 1e-05
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 43 2e-05
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 43 2e-05
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 40 2e-04
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 39 5e-04
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 36 0.004
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 33 0.019
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 33 0.033
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 32 0.059
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 31 0.10
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 31 0.14
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 30 0.24
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 29 0.41
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 29 0.41
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 28 0.95
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 26 2.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.1
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 5.1
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 6.7
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 25 6.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 6.7
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 25 6.7
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 6.7
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 25 8.9
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 25 8.9
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera... 25 8.9
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 146 bits (355), Expect = 1e-36
Identities = 75/140 (53%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Frame = +1
Query: 103 DMPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMXGTQ 282
++PTFK VLVGDGGTGKTTFVKRHLTGEFEKKY+ATLGVEVHPL FHTN G+
Sbjct: 6 NVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDT 65
Query: 283 PDKRSLVVLETDTIFKDNXLSSCST*PLELRTKMYLTGIEIW----SRVCEGIPIXLCGN 450
+ L L + C ++ +++ + W RVCE IPI LCGN
Sbjct: 66 AGQEKLGGLRDGYYIQ----GQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGN 121
Query: 451 KVDIKDRKVKAKTIVFHRKR 510
KVD+K+RKVKAK I FHRK+
Sbjct: 122 KVDVKERKVKAKAITFHRKK 141
Score = 98.7 bits (235), Expect = 5e-22
Identities = 50/86 (58%), Positives = 57/86 (66%)
Frame = +3
Query: 258 IRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPNWHRDLVPCM*RYPYX 437
I FNV DTAGQEK GGLRDGYYIQGQ IIMFDVTSR+TYKNVP+W RDLV P
Sbjct: 58 ICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIV 117
Query: 438 LVRKQSGY*RQKS*GENYCFPQEKNL 515
L + +K + F ++KNL
Sbjct: 118 LCGNKVDVKERKVKAKAITFHRKKNL 143
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/78 (28%), Positives = 43/78 (55%)
Frame = +3
Query: 174 FDWRVREKIRCDSGCRSTSSSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMF 353
+D +V + D R S + + + I+ + DTAGQEKF + YY A++++
Sbjct: 34 WDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVY 93
Query: 354 DVTSRVTYKNVPNWHRDL 407
DVT++ +++ + +W D+
Sbjct: 94 DVTNKDSFEELSSWLSDI 111
Score = 29.5 bits (63), Expect = 0.31
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 255
K VL G GTGK+ ++R + +++ + T+G++ + G
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMG 56
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 47.2 bits (107), Expect = 1e-06
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +3
Query: 228 SSSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPNWHRDL 407
S ++ E R +R + DTAGQE+F L Y AII++D+T+ ++ N W D+
Sbjct: 50 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV 109
Score = 35.9 bits (79), Expect = 0.004
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 115 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 222
FK V +G+ GKT+ + R + +F+ Y AT+G++
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGID 47
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 47.2 bits (107), Expect = 1e-06
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +3
Query: 213 GCRSTSSSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPN 392
G + +I + + I+ + DTAGQE++ + YY A+I++D+T + ++ NV
Sbjct: 44 GVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGR 103
Query: 393 WHRDL 407
W ++L
Sbjct: 104 WLKEL 108
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 115 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 222
FK VL+GD G GK+ + R EF + +T+GVE
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVE 46
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 46.4 bits (105), Expect = 3e-06
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +3
Query: 246 EPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPNWHRDL 407
E + ++ + DTAGQE+F + YY II++DVT + ++ NV W +++
Sbjct: 53 EGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
Score = 35.9 bits (79), Expect = 0.004
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 115 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 222
FK +L+GD G GK+ + R + + Y++T+GV+
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD 44
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 44.0 bits (99), Expect = 1e-05
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +3
Query: 234 SIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPNW 395
+I + + I+ + DTAGQE+F + YY ++++DVT + ++ NV W
Sbjct: 50 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTW 103
Score = 31.5 bits (68), Expect = 0.077
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 222
K +L+GD G GK+ + R F ++ T+G++
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGID 45
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 43.2 bits (97), Expect = 2e-05
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 106 MPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 213
MPT KCV+VGDG GKT + + T +F YV T+
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTV 36
Score = 35.1 bits (77), Expect = 0.006
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 255 PIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNV 386
P + DTAGQE + LR Y Q ++ F VTS +++NV
Sbjct: 50 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENV 93
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 43.2 bits (97), Expect = 2e-05
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 213 GCRSTSSSIPY-EPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVP 389
G + ++P E ++ + DTAGQE++ L YY AI+++D+T + +
Sbjct: 48 GAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK 107
Query: 390 NWHRDL 407
+W ++L
Sbjct: 108 SWIKEL 113
Score = 28.3 bits (60), Expect = 0.72
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 216
K VL+GD GK++ V R + +F+ +T+G
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIG 48
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.9 bits (89), Expect = 2e-04
Identities = 13/48 (27%), Positives = 33/48 (68%)
Frame = +3
Query: 267 NVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPNWHRDLV 410
+V DTAGQE++ +R+ Y G+ ++++++TSR ++ + +++ ++
Sbjct: 59 DVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQIL 106
Score = 29.1 bits (62), Expect = 0.41
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 115 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 213
+K V+VGDGG GK+ + + F +Y T+
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI 41
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 38.7 bits (86), Expect = 5e-04
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +3
Query: 213 GCRSTSSSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPN 392
G + + + + + + DTAGQE+F L +Y +I+++V + ++ +V N
Sbjct: 42 GADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVEN 101
Query: 393 WHRDLV 410
W ++ +
Sbjct: 102 WRQEFL 107
Score = 35.5 bits (78), Expect = 0.005
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 222
K V++GD G GKT + + + +F ++Y AT+G +
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGAD 44
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 35.9 bits (79), Expect = 0.004
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 222
K +++G+ G GKT+ + +++ +F K Y AT+G +
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGAD 44
Score = 35.9 bits (79), Expect = 0.004
Identities = 13/66 (19%), Positives = 33/66 (50%)
Frame = +3
Query: 213 GCRSTSSSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPN 392
G + + + + + + DTAGQE+F L +Y ++++DV + +++ + +
Sbjct: 42 GADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDS 101
Query: 393 WHRDLV 410
W + +
Sbjct: 102 WRDEFL 107
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 33.5 bits (73), Expect = 0.019
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 213
K V+VGDGG GKT + +G F ++YV T+
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTV 47
Score = 30.7 bits (66), Expect = 0.14
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +3
Query: 231 SSIPYEP--RPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNV-PNWHR 401
+ I Y P + I + DTAGQE++ LR Y ++ F + + NV W+
Sbjct: 53 TDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYP 112
Query: 402 DLVPCM*RYPYXLV 443
++ R P LV
Sbjct: 113 EVQHFCPRTPIVLV 126
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 32.7 bits (71), Expect = 0.033
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 112 TFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV 219
T K ++GD GKT+ + ++ G F+++ TLGV
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGV 45
Score = 29.9 bits (64), Expect = 0.24
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +3
Query: 213 GCRSTSSSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNVPN 392
G +I I F++ D GQ +F + + MFD++ + T ++
Sbjct: 44 GVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
Query: 393 WHR 401
W+R
Sbjct: 104 WYR 106
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 31.9 bits (69), Expect = 0.059
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 258 IRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNV 386
I ++ DTAGQE++ LR Y +I F V SR + +NV
Sbjct: 61 IELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENV 103
Score = 28.3 bits (60), Expect = 0.72
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 213
K V++GDG GKT+ + G F + Y T+
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTI 46
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 213
K V+VGDG GKT+ + G F +YV T+
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTV 41
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 252 RPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNV-PNWHRDLVPCM*RY 428
+ ++ + DTAGQE++ LR Y + ++ F + S + +NV W ++
Sbjct: 54 KSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNV 113
Query: 429 PYXLV 443
P+ LV
Sbjct: 114 PFILV 118
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +3
Query: 228 SSSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNV 386
S +I Y+ + + DTAGQ+++ L + I ++++ +TS+ +++ V
Sbjct: 44 SKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMV 96
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 29.9 bits (64), Expect = 0.24
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 231 SSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNV-PNWHRDL 407
+ + + R I + DTAGQE + LR Y +I F V + + NV W ++
Sbjct: 45 ADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV 104
Query: 408 VPCM*RYPYXLV 443
+ P LV
Sbjct: 105 LHFCSNLPILLV 116
Score = 29.1 bits (62), Expect = 0.41
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 213
K V+VGDG GKT + G F + YV T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 29.1 bits (62), Expect = 0.41
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 118 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 213
K V+VGDG GKT + G F + YV T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
Score = 28.7 bits (61), Expect = 0.55
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 231 SSIPYEPRPIRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFDVTSRVTYKNV-PNWHRDL 407
+ + + R + + DTAGQE + LR Y +I F V S + NV W ++
Sbjct: 45 ADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV 104
Query: 408 VPCM*RYPYXLV 443
+ P LV
Sbjct: 105 LHFCSSLPILLV 116
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 124 VLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 249
++VG G+GKTTF+++ HL + + Y+ L V L + N
Sbjct: 12 IVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEAN 56
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 0.95
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 124 VLVGDGGTGKTTFVK 168
VL+G+ GTGKTTF K
Sbjct: 379 VLLGENGTGKTTFCK 393
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -1
Query: 316 PSLRPPNFSCPAVSXTLKRIGRGSYGILEDVLRHPESQRIFSRTLQSNVF*QRLFC 149
P NF P + IG+G+YG++ L P ++ + + + F +FC
Sbjct: 26 PHTHDLNFELPEEYEMINLIGQGAYGVVCAALHKPSGLKVAVKKI--HPFNHPVFC 79
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 121 CVLVGDGGTGKTTFVK 168
C+LVGD TGKT ++
Sbjct: 1872 CILVGDTATGKTCILR 1887
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 5.1
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = -3
Query: 296 LLLSGCVPHIKTNWPRFVWNTRGCTSTPRVATYFFSNSPVKCLLTKVVLPVPPSPTNTHL 117
LLLS + I N PR WN S P T + PV LL +++ +
Sbjct: 538 LLLSKVLGRIFDNTPRKKWNRWNQLSAPSWGTVY----PVYSLLVTIMICY---SIIAPI 590
Query: 116 NVGISSAIFVVLWLFY 69
+G ++ FV+++ Y
Sbjct: 591 IIGFAAVAFVLIYFAY 606
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 239 NTRGCTSTPRVATYFFSNSPVKCLLTKVVLPVPPSPTNTHLN 114
+T+ TSTP V S + C L +V PP+ TNT L+
Sbjct: 45 STKASTSTPFVENC----SNLLCDLASIVEDSPPTLTNTSLS 82
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 28 LERVKSRFSYTITK*NSHKTTKMADDMPT-FKCVLVGDGGTGKTTFVK 168
+E S SYT + + D+P + +LVG G GK+T +K
Sbjct: 1 MEVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLK 48
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 124 VLVGDGGTGKTTFVKRHLTGE 186
VL+G+ G+GKTT + ++L E
Sbjct: 530 VLLGETGSGKTTQITQYLAEE 550
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 362 GYVEHDDSXLSLNIVSVSKTTKLLLSGCVPHIKTNW 255
G ++ D + I+S + T + GC P+ KTNW
Sbjct: 393 GEPQNVDETRASEILSQDELTVDVDLGCGPYAKTNW 428
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 258 IRFNVXDTAGQEKFGGLRDGYYIQGQXAIIMFD 356
I+FNV D GQ+K L Y+ + I + D
Sbjct: 65 IKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVD 97
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 123 CIGRRWWYWQNNLCQKTFDWRVREKIRCDSGCRSTSSSIP 242
C+G WY L K + R RE I G + ++ +P
Sbjct: 79 CVGSEEWYKAKRLSHKEVERRRREAI--SEGIKELANIVP 116
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 20 TLLWNELNLDFLIQSRSKIAIK 85
T +W +DF I SKI+IK
Sbjct: 253 TFVWPSSYIDFFIDDTSKISIK 274
>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
N-acetyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 256 GRGSYGILEDVLRHPESQR 200
G+G G +E+V+ HP+ QR
Sbjct: 37 GKGICGHIEEVIVHPDHQR 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,757
Number of Sequences: 5004
Number of extensions: 48854
Number of successful extensions: 213
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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