Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20222
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 93 3e-20
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 93 3e-20
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 88 6e-19
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 85 7e-18
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 66 3e-12
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 62 6e-11
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 58 5e-10
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 56 2e-09
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 47 1e-06
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 44 1e-05
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 42 7e-05
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 2e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 38 6e-04
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 37 0.001
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 37 0.002
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 36 0.004
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 34 0.010
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 33 0.023
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 32 0.040
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 31 0.071
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 28 0.66
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 27 1.1
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 2.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 3.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 4.6
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 6.1
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 8.1
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 92.7 bits (220), Expect = 3e-20
Identities = 38/69 (55%), Positives = 54/69 (78%)
Frame = +3
Query: 255 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTW 434
VEF R I +D K+IK QIWDTAGQE +R+IT +YYRGA GAL+ YDIT++ +F+ + W
Sbjct: 45 VEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRW 104
Query: 435 LEDARQHSN 461
L++ R+H++
Sbjct: 105 LKELREHAD 113
Score = 46.8 bits (106), Expect = 2e-06
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1
Query: 127 CVKMAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGL 258
C + Y YLFK ++IGD+GVGKS LL++FT F TIG+
Sbjct: 2 CQEDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGV 45
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 92.7 bits (220), Expect = 3e-20
Identities = 38/69 (55%), Positives = 53/69 (76%)
Frame = +3
Query: 255 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTW 434
++F R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LL YD+T +++F+ + TW
Sbjct: 44 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTW 103
Query: 435 LEDARQHSN 461
+ QH++
Sbjct: 104 FSNVEQHAS 112
Score = 52.0 bits (119), Expect = 5e-08
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 139 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLN 261
+Y YL K ++IGD+GVGKSCLLL+F++ F P TIG++
Sbjct: 5 SYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGID 45
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 88.2 bits (209), Expect = 6e-19
Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 4/69 (5%)
Frame = +3
Query: 255 VEFGARMITI----DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNX 422
++F +R+I++ K+IKLQIWDTAGQE FRS+ R+YYRGAAGA+L YD+T +++F
Sbjct: 44 IDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEE 103
Query: 423 LTTWLEDAR 449
L++WL D R
Sbjct: 104 LSSWLSDIR 112
Score = 38.3 bits (85), Expect = 6e-04
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 133 KMAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLN 261
K +Y YL K ++ G +G GKSCLL +F ++ T+G++
Sbjct: 3 KESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGID 45
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 84.6 bits (200), Expect = 7e-18
Identities = 34/68 (50%), Positives = 51/68 (75%)
Frame = +3
Query: 255 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTW 434
V+F R ++GK +KLQIWDTAGQE FR+IT SYYRGA G ++ YD+T +++FN + W
Sbjct: 43 VDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQW 102
Query: 435 LEDARQHS 458
L++ +++
Sbjct: 103 LQEIDRYA 110
Score = 51.2 bits (117), Expect = 8e-08
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +1
Query: 142 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLN 261
Y YLFK ++IGD+GVGKSCLLL+F D + + TIG++
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD 44
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 66.1 bits (154), Expect = 3e-12
Identities = 26/65 (40%), Positives = 44/65 (67%)
Frame = +3
Query: 255 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTW 434
++F ++ + ++ + ++LQ+WDTAGQE FRS+ SY R ++ A++ YDIT +F W
Sbjct: 46 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKW 105
Query: 435 LEDAR 449
+ED R
Sbjct: 106 IEDVR 110
Score = 31.9 bits (69), Expect = 0.053
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 154 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNLV 267
FK + +G+ VGK+ L+ +F +F + TIG++ +
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFL 49
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 61.7 bits (143), Expect = 6e-11
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +3
Query: 258 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTWL 437
+F + + +D K + LQ+WDTAGQE F+S+ ++YRGA +L YD+ ++F L +W
Sbjct: 44 DFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWR 103
Query: 438 ED 443
++
Sbjct: 104 DE 105
Score = 37.1 bits (82), Expect = 0.001
Identities = 14/40 (35%), Positives = 28/40 (70%)
Frame = +1
Query: 148 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNLV 267
+L K II+G++GVGK+ ++ Q+ +++F + TIG + +
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFL 46
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 58.4 bits (135), Expect = 5e-10
Identities = 21/62 (33%), Positives = 41/62 (66%)
Frame = +3
Query: 258 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTWL 437
+F + + +D K + LQ+WDTAGQE F+S+ ++YRGA ++ Y++ ++F+ + W
Sbjct: 44 DFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWR 103
Query: 438 ED 443
++
Sbjct: 104 QE 105
Score = 41.5 bits (93), Expect = 7e-05
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +1
Query: 157 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNLV 267
K +I+GD+GVGK+CL+ QF +++F + TIG + +
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFL 46
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 56.4 bits (130), Expect = 2e-09
Identities = 21/58 (36%), Positives = 38/58 (65%)
Frame = +3
Query: 285 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTWLEDARQHS 458
+ +KL+IWDTAGQE ++S+ YYR A A++ YDIT+ + +W+++ ++ +
Sbjct: 60 ENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA 117
Score = 34.7 bits (76), Expect = 0.008
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 157 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG 255
K +++GD+ VGKS L+L+F +F + TIG
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIG 48
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 47.2 bits (107), Expect = 1e-06
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +3
Query: 282 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTWLE 440
IDG+ L + DTAGQE + ++ Y R G LL Y+IT R +F+ ++T+ +
Sbjct: 51 IDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQ 103
Score = 35.5 bits (78), Expect = 0.004
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 130 VKMAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI 252
++ Y +K +++GD GVGKS L +Q F +D TI
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI 41
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 44.0 bits (99), Expect = 1e-05
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 276 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETF-NXLTTWLEDARQ 452
I +DG I+L +WDTAGQE + + Y ++ + + R++ N +T WL +
Sbjct: 54 IFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEV-- 111
Query: 453 HSNC 464
SNC
Sbjct: 112 SSNC 115
Score = 29.5 bits (63), Expect = 0.28
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 157 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNLV 267
K +I+GD GK+ LL FT F V++ TI N +
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYI 51
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 41.5 bits (93), Expect = 7e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 282 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETF-NXLTTWLED 443
+DGK ++L +WDTAGQE + + Y A L+ + I ++ N T W+E+
Sbjct: 51 VDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEE 105
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 294 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTWLED 443
+I +WDTAGQE + YY ++ +D+T R T+ + W D
Sbjct: 57 EICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRD 106
Score = 27.5 bits (58), Expect = 1.1
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 154 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNL 264
FK +++GD G GK+ + + F+ + T+G+ +
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEV 46
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 38.3 bits (85), Expect = 6e-04
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 264 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYD 395
G + T+ K IK +WD GQ+ R + R Y+ G G + D
Sbjct: 54 GFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVD 97
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 276 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETF-NXLTTWLED 443
+ +DG+ I+L +WDTAGQE + + Y + L+ + + E+ N W+ +
Sbjct: 47 VEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISE 103
Score = 32.3 bits (70), Expect = 0.040
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 157 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNLV 267
K +I+GD GK+CLL+ F+ F V+ T+ N V
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYV 44
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 264 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRE 410
G + T++ + I +WD GQ+ R + R Y++ G + D RE
Sbjct: 50 GFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRE 98
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 35.5 bits (78), Expect = 0.004
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +3
Query: 267 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLTTWLEDA 446
++ I G++ +I DTAGQ+ + + + G G +L Y IT + +F + +
Sbjct: 44 SKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKI 103
Query: 447 RQHSNCEY 470
H+ E+
Sbjct: 104 LNHTGTEW 111
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 34.3 bits (75), Expect = 0.010
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 276 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETF-NXLTTWLED 443
+ +DG+ ++L +WDTAGQE + + Y + L+ + + ++ N W+ +
Sbjct: 47 VEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISE 103
Score = 32.3 bits (70), Expect = 0.040
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 157 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNLV 267
K +I+GD GK+CLL+ F+ F V+ T+ N V
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYV 44
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 33.1 bits (72), Expect = 0.023
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 157 KYIIIGDTGVGKSCLLLQFTDKRF 228
K +++GD VGK+CLL+ +T +F
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF 28
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 276 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETF-NXLTTWLEDARQ 452
+ I + L ++DTAGQE + + Y L+ + +T +F N W +
Sbjct: 44 VMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHH 103
Query: 453 H 455
H
Sbjct: 104 H 104
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 32.3 bits (70), Expect = 0.040
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 285 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYDITRRETFNXLT-TWLEDARQH 455
+ K I+L +WDTAGQE + + Y + LL + I + N +T W + QH
Sbjct: 60 NSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEV-QH 116
Score = 31.5 bits (68), Expect = 0.071
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 157 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNLV 267
K +++GD G GK+CLL+ F+ F + T+ N +
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYI 52
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 31.5 bits (68), Expect = 0.071
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 261 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLXYD 395
FG ++ T++ + ++ IWD GQ+ R+ ++Y+ + D
Sbjct: 48 FGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVD 92
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.3 bits (60), Expect = 0.66
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 383 QSASRAPVVRSGDGPKSFLTSCVPNLQLDLLAINCDHPSTKF 258
Q+ + A V S P S+LTSC+P++++ L + P+ F
Sbjct: 358 QTLACAKEVESERAPTSYLTSCLPSIKVILARVLESSPAFGF 399
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 27.5 bits (58), Expect = 1.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 166 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGLNLV 267
+IGD+ +GK+ L++ + F T+G+N +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFM 48
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 303 LQIWDTAGQEAFR----SITRSY-YRGAAGALLXYDITRRETFNXLTTW 434
L +WD GQEAF S R + +R + +D+ RE L T+
Sbjct: 53 LNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTF 101
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 163 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-----LNLVLG*SQLMASRSSCRFGTQLV 327
I++GDT GK+C+L + ++ + ++L+ Q+ SR + T L
Sbjct: 1873 ILVGDTATGKTCILRLLAAIAGAKIKEMAVNSDTDTMDLIGEYEQIDISRKASELFTDLS 1932
Query: 328 KKLL 339
++LL
Sbjct: 1933 QQLL 1936
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 214 TDKRFQPVHDLTIGLNLVLG*SQLMASRSSCRFGTQLVKKLLGPSPDRT 360
T + P ++ N L S ASRSS G Q LLG S D +
Sbjct: 198 TSENLTPTSSKSLASNTSLVQSFNSASRSSSISGNQYTYNLLGKSTDES 246
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 163 IIIGDTGVGKSCLLLQFTDKRF 228
++IG TG GKS L +Q KRF
Sbjct: 7 VVIGTTGAGKSDLAVQLA-KRF 27
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.6 bits (51), Expect = 8.1
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -1
Query: 452 LSRVLEPRCEXIESLPSGDVVX*QSASRAPVVRSGDGPK-SFLTSCVPNLQLDLLAINCD 276
L+ ++E + + LP DV+ PV S +FLT+ N LL +
Sbjct: 560 LTALVETNSKVADKLPLDDVIS------VPVSASDASSNLAFLTNMSSNFLSVLLNVFSS 613
Query: 275 HPSTKFNPIVRSCTGWNLLSVN 210
PS PI++ W +S N
Sbjct: 614 TPSQYRYPILKCIQTWIFISSN 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,156
Number of Sequences: 5004
Number of extensions: 39584
Number of successful extensions: 148
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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