Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20222
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   5.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 113 PFTNIVLKWHTPIFLNTSSSGTQVWVNHVYSFNSRTKDSNRCMI 244
           P TNI  K +  +    +     ++ +H+ S     +D  RC I
Sbjct: 53  PLTNIEEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNI 96


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 284 NCDHPSTKFNP 252
           NC+H  TKF P
Sbjct: 183 NCNHLMTKFEP 193


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 167 SSGTQVWVNHVYSFNSRTKDSNRC 238
           SSG+ +  N V  FN  T+DS  C
Sbjct: 436 SSGSVIDRNGVMFFNMVTRDSVWC 459


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 390 YDITRRETFNXLTTWLEDARQHSN 461
           Y   + ET++ L +W     +HSN
Sbjct: 257 YTRDQSETYDVLRSWRNLMDEHSN 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,562
Number of Sequences: 438
Number of extensions: 3124
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)