Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20221
         (437 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZRQ1 Cluster: NOL1/NOP2/Sun domain family member 4; n...    33   3.5  
UniRef50_A2ESM3 Cluster: Beige/BEACH domain containing protein; ...    32   6.2  
UniRef50_Q2BC36 Cluster: Two-component response regulator; n=1; ...    31   8.1  

>UniRef50_Q6ZRQ1 Cluster: NOL1/NOP2/Sun domain family member 4; n=1;
           Homo sapiens|Rep: NOL1/NOP2/Sun domain family member 4 -
           Homo sapiens (Human)
          Length = 652

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 193 RARAPPDVKWLPESINIYNVNAGHPPCD*GLTFNYGCPAPQTETHYCFT 47
           R RA PD   +P  ++IY V A   PC   L   Y CP P ++   C T
Sbjct: 501 RVRAYPDT--VPCGLHIYPV-ASQGPCKEPLQIPYSCPLPSSKDSSCST 546


>UniRef50_A2ESM3 Cluster: Beige/BEACH domain containing protein;
           n=1; Trichomonas vaginalis G3|Rep: Beige/BEACH domain
           containing protein - Trichomonas vaginalis G3
          Length = 2594

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +2

Query: 176 RRRASSFIQISNEKKLNRKEKT*FFLSQELVVSRVESKCGFLHHAYFCREKVLGTG*VIP 355
           R R S  +Q   E  +N    T  F+  +  ++  +    FL++A+FC +  +GT  VI 
Sbjct: 144 RLRDSKLLQPDIEYIVN----TALFIKDKTEIAMRKKIVEFLYNAFFCFDGEVGTDLVIQ 199

Query: 356 EVLSSSRIKIA-XIHVEF*YL 415
           +V+ S  I I     +EF Y+
Sbjct: 200 DVIKSITITIRNNFEIEFNYM 220


>UniRef50_Q2BC36 Cluster: Two-component response regulator; n=1;
           Bacillus sp. NRRL B-14911|Rep: Two-component response
           regulator - Bacillus sp. NRRL B-14911
          Length = 515

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 191 SFIQISNEKKLNRKEKT*FFLSQELVVSRVESKCGFLHHAYFCR 322
           SFI+  N+ ++    K    L  E  +S +    GF  H+YFCR
Sbjct: 454 SFIEQLNKIRIEEASK--LLLEGEATISEISGLVGFSDHSYFCR 495


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,103,298
Number of Sequences: 1657284
Number of extensions: 7301303
Number of successful extensions: 13240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13240
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)