Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20221
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    29   0.41 
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   2.9  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   5.1  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    24   8.9  
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    24   8.9  

>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
 Frame = +2

Query: 92  IKSETLVARWVAGIYVVDVYGL-R*PLNIRRRASSFIQISNEKKLNRKEKT*FFLSQELV 268
           IKSET + +    I V +VYGL R   N+ +R   F++ +++  LN  E        E V
Sbjct: 19  IKSETTLKQKKTKIDVQNVYGLDRNTKNLEKRDIQFLE-NDKLDLNSHENEGEKTKTETV 77

Query: 269 VSRVE-SKCGFLHHAY--FCREKVLGTG*VIPEVLSSSRIK 382
            +R +  K G  + A      E VL T   + EVL+  R+K
Sbjct: 78  PTRKQFPKVGEFNSAIHGLSSESVLRTCFRVGEVLAVFRMK 118


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 248 FLSQELVVSRVESKCGFLHHAYFCR 322
           F    L +  VES C  L H+Y C+
Sbjct: 657 FSKDTLFILNVESPCLMLQHSYHCK 681


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 167 LNIRRRASSFIQISNEKKLNRKEK 238
           LN+R RA   +++ N+ +  RKE+
Sbjct: 135 LNVRTRAKELVELLNDSERIRKER 158


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 353 PEVLSSSRIKIAXIHVEF*YLWDPI 427
           PE++ S+ ++ A IH+   Y+  PI
Sbjct: 173 PEIIKSATVQDAEIHISSIYVISPI 197


>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 314 NTHGGGTRTYFQHDLPPVLVKEK 246
           N HGG    +FQ D+ P+ V E+
Sbjct: 327 NFHGGIPGVWFQFDISPMRVIER 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,319
Number of Sequences: 5004
Number of extensions: 29155
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)