Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20221
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0157 + 12860078-12860390,12860474-12860622,12860967-12861128     27   8.7  
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151...    27   8.7  
03_03_0227 - 15596445-15596522,15596635-15596767,15596861-155969...    27   8.7  

>09_03_0157 + 12860078-12860390,12860474-12860622,12860967-12861128
          Length = 207

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 173 IRRRASSFIQISNEKKLNRKEKT*FFLSQELVVSRVESKC 292
           ++++A   +  SN+ ++NRKE   F LS  L   +++ +C
Sbjct: 164 LQKKAEKIVNQSNQSRINRKESL-FHLSCNLHGEKLKLQC 202


>03_06_0259 +
           32712976-32714335,32714454-32714587,32714904-32715144,
           32715254-32715462,32715522-32715583,32715690-32715801,
           32715916-32716208,32716400-32716520
          Length = 843

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 29  HPAYFCREAVMRFGLRGGTAVIKSETLVARWVAGI 133
           HP+ FC+   +  G+  G  V K  T  A ++AGI
Sbjct: 365 HPSPFCQNQALAVGITHGGKVRKKLTHHAGFLAGI 399


>03_03_0227 -
           15596445-15596522,15596635-15596767,15596861-15596913,
           15597825-15597875,15597999-15598068,15598402-15598586,
           15598727-15598780,15599060-15599581
          Length = 381

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -2

Query: 295 PALTFNTTYHQFL*KKKSCXXXXXXXXXIAYLDERARAPPDVKWLPESINIYN 137
           PA +F   Y  +L  K S           A  ++    P DV W  +S  +YN
Sbjct: 212 PARSFPPAYSAYLDSKLSVGDSIRSVMNGAIKEKLKIIPKDVVWEEQSYTVYN 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,723
Number of Sequences: 37544
Number of extensions: 219239
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)