Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20221
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)         29   1.7  
SB_25327| Best HMM Match : rve (HMM E-Value=6.6e-22)                   29   1.7  
SB_57305| Best HMM Match : rve (HMM E-Value=6.6e-22)                   27   6.8  
SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_12365| Best HMM Match : rve (HMM E-Value=0.00031)                   27   6.8  
SB_6898| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  
SB_5129| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  
SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)                   27   6.8  
SB_40212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22)                   27   6.8  
SB_25480| Best HMM Match : rve (HMM E-Value=6.6e-22)                   27   6.8  
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)                   27   6.8  
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)          27   8.9  

>SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
          Length = 609

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 356 QVSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKIMFFLSYLV 219
           Q+  N Y  +  DRNT GGG   Y + DL   L  +    +L  L+
Sbjct: 217 QIHINGYDIIRSDRNTRGGGVCIYIKSDLSHTLRSDLADPYLEMLI 262


>SB_25327| Best HMM Match : rve (HMM E-Value=6.6e-22)
          Length = 319

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKIMFFLSY 225
           V PN+ +K  + R +          HDLPP+ V +KI +   +
Sbjct: 222 VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKIQYLCCF 264


>SB_57305| Best HMM Match : rve (HMM E-Value=6.6e-22)
          Length = 351

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 204 VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 240


>SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 938

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 791 VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 827


>SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 678 VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 714


>SB_12365| Best HMM Match : rve (HMM E-Value=0.00031)
          Length = 290

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 143 VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 179


>SB_6898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 2   VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 38


>SB_5129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 95  VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 131


>SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)
          Length = 800

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 719 VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 755


>SB_40212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 2   VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 38


>SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22)
          Length = 875

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 728 VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 764


>SB_25480| Best HMM Match : rve (HMM E-Value=6.6e-22)
          Length = 373

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353 VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
           V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 226 VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 262


>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
          Length = 1003

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 353  VSPNRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEKI 243
            V PN+ +K  + R +          HDLPP+ V +K+
Sbjct: 898  VDPNQVVKTLKHRQSVSKKYYDSHSHDLPPLQVGDKV 934


>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1808

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 344  NRYLKLFRDRNTHGGGTRTYFQHDLP 267
            + Y  L +DR +HGGG   Y  + +P
Sbjct: 964  SNYNLLRKDRPSHGGGVAAYIHNTVP 989


>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
          Length = 418

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 375 REELKTSGIT*PVPKTFSRQKYAWWRNPHLLSTRLTTSSC 256
           REE++T+ I  P P  F R     W   HL+  R+   SC
Sbjct: 156 REEVQTNSIKYPFPARFVRVHPVSW---HLICMRVELYSC 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,914
Number of Sequences: 59808
Number of extensions: 231159
Number of successful extensions: 504
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)