Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20221
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077540-3|AAC26312.2|  421|Caenorhabditis elegans C-type lectin...    27   6.0  
AL110482-7|CAB54388.1|  106|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   7.9  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   7.9  

>AF077540-3|AAC26312.2|  421|Caenorhabditis elegans C-type lectin
           protein 21 protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 344 NRYLKLFRDRNTHGGGTRTYFQHDLPPVLVKEK 246
           NR LKLF + + +    R  +QH  P V ++ K
Sbjct: 32  NRCLKLFSEPSNYENAQRQCYQHGGPLVTIRSK 64


>AL110482-7|CAB54388.1|  106|Caenorhabditis elegans Hypothetical
           protein Y39G8B.9 protein.
          Length = 106

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 281 ESKCGFLHHAYFCREKVLGTG*VIPEVLSSSRIKI 385
           E  CGF H  Y C E+ L     I + LS   I++
Sbjct: 68  ERTCGFCHPDYVCNEQCLTQAPRIMKELSKEEIEM 102


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 65  NALLLHGRNRQGGGTYPCG 9
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 65  NALLLHGRNRQGGGTYPCG 9
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,543,333
Number of Sequences: 27780
Number of extensions: 171866
Number of successful extensions: 334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)