Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20221
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   7.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 187 RAPPDVKWLPESINIYNVNAGH 122
           R PPD  W P+ +   N +  +
Sbjct: 102 RLPPDKVWKPDIVLFNNADGNY 123


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 278 VESKCGFLHHAYFCRE 325
           V++ C  LHH + C E
Sbjct: 463 VDALCNTLHHWHHCPE 478


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 182 RASSFIQISNEKKLNR 229
           +A+S  ++SN KKL+R
Sbjct: 566 KANSQTEVSNSKKLDR 581


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -2

Query: 178 PDVKWLPESINIYN 137
           P++ WL + I +Y+
Sbjct: 52  PEITWLKDGIELYH 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,747
Number of Sequences: 438
Number of extensions: 2334
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)