Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20221
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58050.1 68416.m06471 expressed protein                             28   2.4  
At3g30560.1 68416.m03867 hypothetical protein                          28   3.2  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    28   3.2  
At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At5g13620.1 68418.m01578 expressed protein ; expression supporte...    27   7.3  
At5g47970.1 68418.m05926 nitrogen regulation family protein stro...    26   9.7  

>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 88  GCPAPQTETHYC 53
           GCP+P+ E HYC
Sbjct: 635 GCPSPRAENHYC 646


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 196 HPDXXXXXXXXXXXNMIFSFTRTGGK 273
           HPD           NM+FSFT  GGK
Sbjct: 154 HPDAKNFRANVRPYNMLFSFTSLGGK 179


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +2

Query: 17   GRYHHPAYFC---REAVMRFGLRGGTAVIKSETL 109
            GRY HPAY C   RE + R  L    + +  + L
Sbjct: 1711 GRYRHPAYCCERYRELIQRHILSASDSAVNEKNL 1744


>At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535:  PPR repeat
          Length = 506

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 432 NVIGSHRY*NSTWMXAILIREELKTSGIT*PVPKTFS 322
           N++  H   N     A L+ EE+K SGI+ P   T+S
Sbjct: 200 NILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYS 236


>At5g13620.1 68418.m01578 expressed protein ; expression supported
           by MPSS
          Length = 301

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 103 LTFNYGCPAPQTETHYCFTAEIGRVV 26
           LTF+ G P  + E H  FT   G ++
Sbjct: 206 LTFSRGYPLSEAEVHAYFTRRFGEII 231


>At5g47970.1 68418.m05926 nitrogen regulation family protein strong
           similarity to unknown protein (emb|CAB87804.1) ;
           contains Pfam domain PF01207: Dihydrouridine synthase
           (Dus); similar to (SP:P45672) NIFR3-like protein
           (SP:P45672) [Azospirillum brasilense]
          Length = 387

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 103 LTFNYGCPAPQTETHYCFTA 44
           + FN GCP+P+     CF A
Sbjct: 95  INFNCGCPSPKVSGRGCFGA 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,122,340
Number of Sequences: 28952
Number of extensions: 164602
Number of successful extensions: 286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)