Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20220
         (490 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O05734 Cluster: Surface protein Lk90; n=6; Leptospira|R...    33   3.4  
UniRef50_A0DUN5 Cluster: Chromosome undetermined scaffold_64, wh...    33   4.5  

>UniRef50_O05734 Cluster: Surface protein Lk90; n=6; Leptospira|Rep:
           Surface protein Lk90 - Leptospira interrogans
          Length = 846

 Score = 33.1 bits (72), Expect = 3.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 442 YIHSLFTVLITTESCHVDITTSQCNWGKNNKPKYLFLKYGKLRNETSFF*TKNITWTLHS 263
           +  S +T +  TES  V+IT S  +  K     + F   GK  N      T+ +TW+  +
Sbjct: 734 HTQSSYTPVTVTESGIVNITISLSSISKTKGSTHQFKATGKFENGAEIDLTELVTWSSSN 793

Query: 262 PT 257
           PT
Sbjct: 794 PT 795


>UniRef50_A0DUN5 Cluster: Chromosome undetermined scaffold_64, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_64,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 844

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 400 CHVDITTSQCNWGKNNKPKYLFLKYGKLRNETSFF*TKNITWTLHSP-THIF 248
           CH  I   + N  K  K   +++K GK++  +  F + N+  +L  P T+IF
Sbjct: 375 CHNMIIDEETNQEKKEKQANMYMKLGKVKEASEIFESLNVKQSLDDPQTYIF 426


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,162,888
Number of Sequences: 1657284
Number of extensions: 7910748
Number of successful extensions: 11995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11992
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)