Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20220
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   4.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.1  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    25   6.1  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    25   8.1  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 318 NFPYLRNKYLGLLFFPQLH*DVVISTWHD 404
           NF Y+  +Y+ L+F P L   ++   W D
Sbjct: 256 NFRYVNYRYMKLIFHPLLDRFLIQQDWKD 284


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 134  SYILF*IT*VPHNTRYYFALRGLIFTSIKGGFMISSI 24
            SY+ + +T  P   RYY    G +F S+  G  +SS+
Sbjct: 1042 SYLSWSVTFDPQRRRYYINPSGCVFVSL--GIYLSSL 1076


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 415 ITTESCHVDITTSQCNWGKNNKPKYLFLKYGK 320
           ++ ESC +    + C  G+N+K    F+K GK
Sbjct: 282 MSEESCGIADLITTCLGGRNHKCAVAFVKTGK 313


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 406 ESCHVDITTSQCNWGKNNKPKYLFLKYGK 320
           +SC +    + C  G+NN+    F+K GK
Sbjct: 281 QSCGIADLVTSCLGGRNNRCAEAFVKTGK 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,106
Number of Sequences: 5004
Number of extensions: 37064
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)