Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20220
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1195 - 25149891-25151402,25152194-25152493                       31   0.66 
02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824           27   8.1  

>08_02_1195 - 25149891-25151402,25152194-25152493
          Length = 603

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 373 CNWGKNNKPKYLFLKYGKLRNETSFF*TKNITW 275
           C + KN  PKYL  K  +  N  SF   +N++W
Sbjct: 450 CTFQKNGPPKYLDPKEDRQENFASFVALRNLSW 482


>02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824
          Length = 649

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 192 FSGDTYRKTALLGSHSKC 139
           FSG+TY KT  + +HS C
Sbjct: 101 FSGNTYNKTTTIITHSDC 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,597
Number of Sequences: 37544
Number of extensions: 195543
Number of successful extensions: 265
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)