Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20220
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    31   0.34 
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    31   0.34 
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF016442-1|AAB65918.1|  340|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical protein
            C09H6.1b protein.
          Length = 1309

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +3

Query: 57   CKN*TAKCKVVSCVVWYLGYLKENVTNHIYCGFLIKQSSDRYRR*SFAFKIIC*STRFCK 236
            CKN + K  +    + +  Y ++ + N I      +     Y+R     + +  + ++CK
Sbjct: 1106 CKNCSFKTSIHRNFIEHSAYHRQQLINRINITLKRQPPRIEYQRPKLKHQFVAKNAKYCK 1165

Query: 237  KCT*NMCVGECN 272
            KCT   CV + N
Sbjct: 1166 KCT-FKCVSQSN 1176


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical protein
            C09H6.1a protein.
          Length = 1311

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +3

Query: 57   CKN*TAKCKVVSCVVWYLGYLKENVTNHIYCGFLIKQSSDRYRR*SFAFKIIC*STRFCK 236
            CKN + K  +    + +  Y ++ + N I      +     Y+R     + +  + ++CK
Sbjct: 1106 CKNCSFKTSIHRNFIEHSAYHRQQLINRINITLKRQPPRIEYQRPKLKHQFVAKNAKYCK 1165

Query: 237  KCT*NMCVGECN 272
            KCT   CV + N
Sbjct: 1166 KCT-FKCVSQSN 1176


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 179 PIGRLLY*EATVNVVSYILF*IT*VPHNTRYYFALRGLIFTSIKGGFM 36
           P GRL Y    V+ V    F +    H T YY AL    +TSI   F+
Sbjct: 591 PFGRLSYCAYIVHWVVLFWF-LNVGGHATHYYSALEVFTYTSIPATFL 637


>AF016442-1|AAB65918.1|  340|Caenorhabditis elegans Hypothetical
           protein K12B6.3 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 39  ETAFNTCKN*TAKCKVVSCVVWYLGYLKENVTNH 140
           ET  + CK+ T   K    V+ Y GY K +V +H
Sbjct: 137 ETRTHDCKDLTRLRKFFEAVLAYTGYAKVSVISH 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,533,762
Number of Sequences: 27780
Number of extensions: 209089
Number of successful extensions: 312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)