Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20220
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   0.76 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.3  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 406 ESCHVDITTSQCNWGKNNKPKYLFLKYGKLRNE 308
           ESC V    + C  G+N K    F+K GK  +E
Sbjct: 255 ESCGVADLIATCYGGRNRKICEAFVKTGKKISE 287


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 69  FNFYKY*RRFHDQFNKFGLIRNY 1
           F  +KY  RF +   K+G+++N+
Sbjct: 52  FMCHKYGLRFEEVSEKYGILQNW 74


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 231 RNVLINKLF*MRNFSGDTYRKTALL 157
           RNV    +F   N SGD+   T LL
Sbjct: 714 RNVTTCNMFRKTNLSGDSSSGTTLL 738


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,099
Number of Sequences: 438
Number of extensions: 2822
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)