Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20220
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12900.1 68418.m01480 expressed protein                             28   3.9  
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi...    28   3.9  

>At5g12900.1 68418.m01480 expressed protein
          Length = 562

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 415 ITTESCHVDITTSQCNWGKNNKPKYLFLKYGKLRNETSFF*TKNITW 275
           I ++S + D     C + KN KPK L  +  +  N +SF   +N++W
Sbjct: 391 IISQSVYQDF--ENCVFQKNGKPKLLDPEQDRQANFSSFASLRNLSW 435


>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 658

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 219 INKLF*MRNFSGDTYRKTALLGSHSKCG 136
           ++ L   R FSG+T+    L+  +SKCG
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCG 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,574,503
Number of Sequences: 28952
Number of extensions: 178188
Number of successful extensions: 303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)