Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20219
         (570 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WLJ1 Cluster: Putative uncharacterized protein; n=1; ...    35   1.2  

>UniRef50_Q0WLJ1 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 100

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +3

Query: 180 PVLMMIDREKEVVLLLHIGRKSKASRSRGESQCLSVLFFC 299
           PV+  I+++KE ++ L IG+K K++ +RG+   +   FFC
Sbjct: 27  PVMKKINKKKEAIIHLEIGQKKKSNFTRGKFFFVVFPFFC 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,429,063
Number of Sequences: 1657284
Number of extensions: 5480144
Number of successful extensions: 11314
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11314
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)