Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20219
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.2  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   4.2  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   4.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   4.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 452 LIREYCTGYINPSCVL 499
           LI ++ +GYI P CVL
Sbjct: 247 LIEDF-SGYIKPKCVL 261


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 355 NHFYYIYRCFLSTK*LNILQK 293
           N+  ++Y CF ST  L IL +
Sbjct: 140 NYCQFLYNCFHSTLLLMILSR 160


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 433 LSCLKKNNSIL*LANVKTNSKLVWYLNHFYYIYRCFLST 317
           +S LKK   +L L  +   + + +Y+  FY +   FL T
Sbjct: 75  MSNLKKLKFLLKLGQLLGLAPVKFYVQKFYVVILAFLLT 113


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 433 LSCLKKNNSIL*LANVKTNSKLVWYLNHFYYIYRCFLST 317
           +S LKK   +L L  +   + + +Y+  FY +   FL T
Sbjct: 1   MSNLKKLKFLLKLGQLLGLAPVKFYVQKFYVVILAFLLT 39


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 10  KFVIVIWILAIAIFPENLISKYLL 81
           +F  V+W   +A+F E L+ K  L
Sbjct: 396 QFKAVLWRSILAVFKEPLLIKVRL 419


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 10  KFVIVIWILAIAIFPENLISKYLL 81
           +F  V+W   +A+F E L+ K  L
Sbjct: 396 QFKAVLWRSILAVFKEPLLIKVRL 419


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,951
Number of Sequences: 336
Number of extensions: 1565
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)