Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20219
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   4.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   5.9  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   7.8  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 373 KLVWYLNHFYYIYRCFLSTK*LNILQKNST-DRHWL 269
           +L  YLNHFY ++  F + K   ++   +  D  WL
Sbjct: 92  ELFTYLNHFYDVFATFCTVKTCPVMSAAANFDYTWL 127


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 346 YYIYRCFLSTK*LNILQKNSTDRHWLSPLDLEAFDFLP 233
           Y   + ++ +  LN+LQ+NS  ++ L   ++ A DF P
Sbjct: 625 YRANQLYIYSTALNLLQRNSVLQNGLHGREIRAMDFNP 662


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 307 NILQKNSTDRHWLSPLDLEAF 245
           + L  NS DR+ LS  D+EAF
Sbjct: 48  SFLYPNSVDRYALSSYDIEAF 68


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 436 VLSCLKKNNSIL*LANVKTNSKLVWYLNHFYYI 338
           + S L   N I   AN+K ++    Y NHFY +
Sbjct: 167 ICSFLSLPNKIAVTANLKLSNPTKAYTNHFYIL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,776
Number of Sequences: 5004
Number of extensions: 25759
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)