Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20218
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    25   0.62 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.62 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.7  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 359 RLAMLRYKQSGRLGRSRSAHTEHVLLRP 442
           +L +LR+ QSG L R    H    ++ P
Sbjct: 109 KLCLLRFSQSGNLNRHMRVHGAASMMPP 136


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 359 RLAMLRYKQSGRLGRSRSAHTEHVLLRP 442
           +L +LR+ QSG L R    H    ++ P
Sbjct: 365 KLCLLRFSQSGNLNRHMRVHGAASMMPP 392


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 581 PKRYRLQRRRAPYQCPSCEQ 522
           P+  R    RA   CP+C++
Sbjct: 279 PRSQRRYTGRATCDCPNCQE 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,616
Number of Sequences: 336
Number of extensions: 2480
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)