Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20218
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    29   0.66 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   1.2  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.7  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   6.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.2  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   8.1  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -2

Query: 509 ASLRVEVGRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQV-CLYDINSLL 333
           ++LR ++ +     R +A+  L G       G +     G+ ++ +A+ +  L+D+  L+
Sbjct: 427 STLRSDIEKSSKFSRTNALKTLYGSKPHVFSGSSQRRATGKNIHESAIALFSLHDVPGLM 486

Query: 332 DVLVYRILSNGS 297
           + L+Y+    GS
Sbjct: 487 EELIYKSRGRGS 498


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 60   HELHR*ELLQVRSDRSHHCRHYCFHCRVLRLLWRCQREPLH-DNNVFSIP 206
            HE+ R     V   + HH +     C +  L+  C  E  H DN + +IP
Sbjct: 1594 HEISRFNSQSVFKSKKHHLKSIVVKCTLQLLMLNCLWELFHSDNMLTNIP 1643


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 267 LEDSVMRNLNASITQYPVDKN 329
           +EDS + N+ AS+  + VDKN
Sbjct: 421 VEDSFLSNIGASLLSFTVDKN 441


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 93  ELVEVLIGEVHVRIRVYFSPDAN 25
           E++E   GE  + +R++F+P+A+
Sbjct: 81  EVIETGWGEFDIMVRIFFAPEAH 103


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = -2

Query: 359 CLYDINSLLD-VLVYRILSNGSV--QVAHNRIFQVRM-LM*PAMPTASSATNMIKRNTEN 192
           C   I+ +L  VL+  I  +GSV   +A N   +V   L   ++  A+S   +I +N EN
Sbjct: 383 CTSFISGILQLVLLNNIREDGSVISALAQNSFHKVESALANVSVAWANSTNQIILKNQEN 442

Query: 191 VIIMQWFSLTAPQQPKNATMKTIM 120
           +    + S+       N+T+ T M
Sbjct: 443 INNNMFGSIHNTTLSLNSTLNTFM 466


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 161 APQQPKNATMKTIMPTMMRT 102
           AP QPK +   +I+PT+ RT
Sbjct: 810 APVQPKTSQASSILPTVPRT 829


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = -3

Query: 523 NQFSKHPFEWKLVEFSVQAATTPSLISWAEQHVLGMGRP*SAQSAGLFIPQHCKSVCMIS 344
           N F  HP E +++   V+ A TPS  ++ ++         + +  G+ + +H K   M  
Sbjct: 32  NVFDIHPTESEVIPGEVEYADTPSHQNFLQKFFSDFKPVKADREDGVALKRHLKGRHMQM 91

Query: 343 IVFWTFLSTG 314
           I     + TG
Sbjct: 92  IAIGGAIGTG 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,704
Number of Sequences: 5004
Number of extensions: 42529
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)