Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20218
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    28   6.3  
01_01_0870 - 6789903-6792251                                           28   6.3  

>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 488 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVC 357
           G V  AG D A   LLGG + A+  + + GP  R ++ + L+ C
Sbjct: 277 GMVDNAGNDSAKCVLLGGLSEAKKLELIAGPEMR-IFRSDLRWC 319


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -2

Query: 488 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVCLYDINSLLDVLVYRIL 309
           G + G+    AV +L G     +  +T +  VG   +T  +++  + +N    +LVY  +
Sbjct: 490 GTLPGSTTVVAVKNLKGVGQAEKQFRTEVQTVGMIRHTNLVRLLGFCVNGNRRLLVYEYM 549

Query: 308 SNGSVQVAH 282
           SNGS+  AH
Sbjct: 550 SNGSLD-AH 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,944
Number of Sequences: 37544
Number of extensions: 302130
Number of successful extensions: 887
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)