Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20218
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 49 2e-06
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 44 1e-04
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 40 0.001
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 40 0.001
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 40 0.002
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13) 36 0.024
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 36 0.032
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2) 35 0.043
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 35 0.056
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 31 0.91
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 29 2.8
SB_36075| Best HMM Match : CCD (HMM E-Value=4.3) 29 2.8
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 29 2.8
SB_9942| Best HMM Match : CCD (HMM E-Value=4.3) 29 2.8
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 29 2.8
SB_37997| Best HMM Match : Chordopox_A13L (HMM E-Value=2.1) 28 4.9
SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0) 28 4.9
SB_30575| Best HMM Match : Pico_P2A (HMM E-Value=5.9) 28 4.9
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 28 4.9
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_23937| Best HMM Match : PAN (HMM E-Value=0.12) 28 6.4
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 27 8.5
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/77 (33%), Positives = 36/77 (46%)
Frame = +1
Query: 28 GIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXXXXXXXCCGAVKENHCMIITFSVFL 207
G AEI PY++ + +F CCGA KEN CM+I F + L
Sbjct: 385 GAYAEIKFGPYISISSNDFMSGSRLLIAVGCIITIIAFFG-CCGAWKENKCMLILFFILL 443
Query: 208 LIIFVAELAVGIAGYIS 258
LI+ E+A + GYI+
Sbjct: 444 LIVLGLEIAAAVLGYIN 460
Score = 47.6 bits (108), Expect = 7e-06
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Frame = +3
Query: 261 TDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHG----LPIPST 428
+DL D ++RN I +YP KN + ID +Q D +CCG P+DW +G P +
Sbjct: 466 SDLTDDIIRN----IKEYP--KNNKAAIDAMQMDFECCGAKGPSDWTFYGQMKYKAGPGS 519
Query: 429 CCSAQEINDGVVAACTEN----STNFHSKGCLLNWLFT*RTLVWCSPALESV 572
CC ND + + ST+ S G N + T + LE V
Sbjct: 520 CCGKPN-NDACLPGTRNSKLPRSTHTWSAGIFKNKMATRTDSISLDQVLEEV 570
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 270 EDSVMRNLNASITQY--PVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQ 443
+D V+ L + Y P +N Q ID +QT+L+CCG+NS DW + I C S
Sbjct: 136 QDKVVEKLKDDLKHYRDPDKENFQFLIDRLQTNLKCCGVNSYTDWQTN---IYFNCSSPG 192
Query: 444 EINDGVVAACTENS 485
+ GV +C + S
Sbjct: 193 SESCGVPFSCCKES 206
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY 252
CCGA KEN CM+I F FLL++ + E+ G Y
Sbjct: 72 CCGAWKENKCMLICFFAFLLLLLILEIVGGALAY 105
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Frame = +3
Query: 267 LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWAD-----HGLPIPSTC 431
+E+ + +++ +I YP KN +K+I+ +QT +CCG ++ DW + +P +C
Sbjct: 111 IENRLDKDILKAIENYP-GKN-EKSINDMQTKFKCCGADNYTDWQSNIKMKNSSSVPDSC 168
Query: 432 CSAQEINDGVVAACTENSTNFHSKGC 509
C +++ GV ++ + ++KGC
Sbjct: 169 CKSEKAGCGV--GGVKDPKDIYTKGC 192
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +3
Query: 267 LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW--ADH-GLP--IPSTC 431
++D + L I Y + + +D +Q ++CCGI + DW +D+ GL +P +C
Sbjct: 219 VKDELENELKNQIKSYT--GSARNAVDDMQKTVKCCGITTYEDWKSSDNLGLTDNVPDSC 276
Query: 432 CSAQEINDGVVAACTENSTNFHSKGCLL 515
C+ E + G+ + T + +GC +
Sbjct: 277 CTTVEKDCGM--GQRKTPTRIYKEGCYM 302
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 273 DSVMRNLNASITQY--PVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQE 446
D V+ L + Y P +N Q ID +QT+L+CCGINS DW + + C S
Sbjct: 137 DKVVAKLKDDLQHYRDPDKENFQFLIDRLQTNLKCCGINSYNDWQTN---VYFNCSSPGS 193
Query: 447 INDGVVAACTENS 485
+ GV +C + S
Sbjct: 194 ESCGVPFSCCKES 206
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYI 255
CCGA+KE+ C++ TF L II E+ GY+
Sbjct: 344 CCGAIKEHRCLLATFFALLFIILAVEITGTALGYV 378
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Frame = +3
Query: 228 TGCGHRWLHKHTDLEDSVMRNLNASITQYPVD--KNVQKTIDIIQTDLQCCGINSPADW- 398
TG +++++ +E+ + +++N +I Y + + D IQ +CCGIN DW
Sbjct: 371 TGTALGYVYRNK-VEEQLGKDMNDTIVSYGEKGKEGITDAYDAIQKKEKCCGINGFKDWQ 429
Query: 399 ------ADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSKGC 509
+H + +P +CC + ++ G EN + ++KGC
Sbjct: 430 RSYYTKGNHSI-VPDSCC--KTVSKGCGINFKEN--DIYTKGC 467
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +3
Query: 264 DLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQ 443
D ++ L + +Y D Q ID +QT L+CCG+ S DW + C S
Sbjct: 133 DKVQALKERLKQDLKKYLDDPLNQDLIDFMQTLLKCCGVESYKDWQANPY---FNCSSPG 189
Query: 444 EINDGVVAACTENSTNFH 497
++ GV +C + S F+
Sbjct: 190 RMSCGVPFSCCKESIQFN 207
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +1
Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY 252
C GA++EN C + + + + + +A G Y
Sbjct: 96 CVGALRENTCFLTVYGTSVFLCLILLIACGAVAY 129
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY 252
C GA KEN CM+ TF V LLI+ E+A + Y
Sbjct: 74 CLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAY 107
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = +3
Query: 330 VQKTIDIIQTDLQCCGINSPADWA-----DHGLPIPSTCC 434
V K D +Q +CCG+N DW + +P +CC
Sbjct: 146 VTKAFDALQEKQKCCGVNGYLDWKASKKYNGTSTVPDSCC 185
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 234 CGHRWLHKHTDLEDSVMRNLNASITQY--PVDKNVQKTIDIIQTDLQCCGINSPADW 398
CG + LE V L +I Y P ++ ID +QT+LQCCG+ DW
Sbjct: 150 CGGLGFYYKDVLETKVTAQLKDAIVLYRDPTKGDLHLIIDTVQTELQCCGVQGLNDW 206
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 291 LNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADH-----GLPIPSTC 431
L + Y D + Q+ ID IQT +CCGI S DW + P+P+ C
Sbjct: 137 LEDGLKSYQQDSSKQEFIDFIQTRFKCCGIESYKDWQANRYFSCSSPVPTAC 188
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYI 255
C GA+KEN + ++ +F+ + +A G+ ++
Sbjct: 91 CVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFL 125
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYI 255
C GA++EN C++ FSV L IIF +LA+G+ ++
Sbjct: 65 CIGALRENICLLKFFSVVLAIIFFLQLALGVFVFV 99
Score = 35.9 bits (79), Expect = 0.024
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 267 LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW 398
+E ++ L ++T+Y + ++Q ID +Q + +CCG DW
Sbjct: 104 VEAVIVEKLQTAVTKYRDNADLQNLIDGVQQEFKCCGAKGINDW 147
>SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13)
Length = 174
Score = 35.9 bits (79), Expect = 0.024
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +3
Query: 276 SVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINS-PADWADH-----GLPIPSTCCS 437
S++ +L I +P + +D IQ LQCCG +S P DW ++ +P +CC
Sbjct: 67 SILADLKNRIKNFPGPGT--RVVDSIQERLQCCGADSGPNDWMNNKHFLQSASVPDSCCK 124
Query: 438 AQEINDGVVAACTENSTNFHSKGC 509
+ +T H++ C
Sbjct: 125 QEYREKDCGLGQIIANTRIHTEPC 148
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 35.5 bits (78), Expect = 0.032
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYI 255
C +KEN +++++ + L++IF+ E+A G+ I
Sbjct: 78 CVAVIKENRFILVSYLIMLVLIFILEIATGVVAVI 112
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 35.5 bits (78), Expect = 0.032
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 303 ITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEIND-GVV-AACT 476
+ Y D ++Q ID IQ++L+CCG S DW +H CSAQ + GV + C
Sbjct: 57 VVHYQDDLDLQNAIDGIQSNLKCCGGYSYHDW-NHNKYFN---CSAQAVEACGVPHSCCV 112
Query: 477 ENSTN 491
E+ N
Sbjct: 113 EDQIN 117
>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
Length = 108
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 264 DLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW 398
++ SV ++ I Y + ++Q ID IQ + +CCG +S DW
Sbjct: 35 NVRKSVQNQISKGIVNYRDNLDLQNIIDGIQENFKCCGSSSINDW 79
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 34.7 bits (76), Expect = 0.056
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYI 255
CCGA+KE+ CM+ T+ + IF E+ + Y+
Sbjct: 77 CCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYV 111
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Frame = +3
Query: 267 LEDSVMRNLNASITQYPVDKN--VQKTIDIIQTDLQCCGINSPADWAD------HGLPIP 422
+E ++ ++ +++ +Y + + V + ID I D +CCG DW + H +P
Sbjct: 116 IEKNLHGDIRSTMNEYHLSGHDAVTRAIDEIHRDFKCCGNAQYRDWFETKWAKTHPDMVP 175
Query: 423 STCC---SAQEINDGVVAACTENSTNFHSKGCLL 515
+CC S + N+ + +++ T + +GC +
Sbjct: 176 RSCCKDPSDSKCNENI----SKDPTKIYRRGCYM 205
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 261 TDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW 398
TD + V N + I Y D +++ +D IQ +L+CCG DW
Sbjct: 157 TDTREIV--NWSVFILNYQ-DDSIRDDLDSIQKNLKCCGFKDYNDW 199
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 154 CGAVKENHCMIITFSVFLLIIFVAELAVGIAGYISIRTWKIRLC 285
C + N C++ T+ F+LI+ VAE V IA Y+ I K+ C
Sbjct: 38 CALLYMNPCLLKTYFSFMLILVVAE--VTIAVYLLIEKDKLLCC 79
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 25 VGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXXXXXXXCCGAVKENHCMIIT 192
+GI ++++ + +F + Y CCGAVKE+ CM+ T
Sbjct: 290 IGIWTKVDAGQFDSFLGSSGYSIPAWTMIGAGAFVTFVGFFGCCGAVKESRCMLAT 345
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 151 CCGAVKENHCMIITFS 198
CCGAVKEN C ++ S
Sbjct: 217 CCGAVKENKCFLLLVS 232
>SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)
Length = 146
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 306 TQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGL 413
T+ PV+ Q I + DL G++ ADW+DHGL
Sbjct: 21 TEKPVEVTGQTHIGKLMLDL-VEGLDISADWSDHGL 55
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 279 PNLPSPYAYVTSDAHSQFSHE 217
PNLPS Y Y T +++ ++HE
Sbjct: 962 PNLPSNYRYPTHSSYASYAHE 982
>SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)
Length = 146
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 306 TQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGL 413
T+ PV+ Q I + DL G++ ADW+DHGL
Sbjct: 21 TEKPVEVTGQTHIGKLMLDL-VEGLDISADWSDHGL 55
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 25 VGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXXXXXXXCCGAVKENHCMIITFSV 201
VGI A I YM + + Y CCGA+KE+ C++ T S+
Sbjct: 52 VGIWARIQFSDYMKLSSHD-YATAAYILIGIGFLIAIIGFIGCCGALKEHTCLLKTVSI 109
>SB_37997| Best HMM Match : Chordopox_A13L (HMM E-Value=2.1)
Length = 440
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 45 KLVSLHELHR*ELLQVRSDRSHHCRHYCFHCRVLRLLW 158
K+ LHE+ L++ S++ H R YC+ R L W
Sbjct: 56 KITKLHEIT--VFLRLTSNKEHKRRLYCYFLRTYVLFW 91
>SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)
Length = 654
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 292 RLRITESSKSVCLCN-QRCPQPVQP 221
R+R T S S+ LCN ++ PQP+ P
Sbjct: 415 RMRCTHSKLSIALCNLRKYPQPLPP 439
>SB_30575| Best HMM Match : Pico_P2A (HMM E-Value=5.9)
Length = 564
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 228 TGCGHRWLHKHTDLEDSV 281
+ CG +WLH+HT L++ +
Sbjct: 148 SSCGGQWLHRHTRLQNRI 165
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 157 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYISIRTWKIRLCAT 291
GA K+N+ ++ +V +IFV E+++G A +++R I +T
Sbjct: 82 GAFKQNNRVLTILAVLFFVIFVTEISLG-ANSLTLRNEGISKSST 125
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Frame = +3
Query: 312 YPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLP--------IPSTCC 434
Y V + ID Q CCG+ DW G +PS+CC
Sbjct: 136 YGEHPGVTEMIDNTQMGSMCCGVTDYRDWFTSGWAARQGVSNRVPSSCC 184
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 87 QVRSDRSHHCRHYCFHCRVLRLLWRCQREPLHDNNVFSIPLDHIR 221
QV +H C+ + V+ L W ++E + D+ + SI +D I+
Sbjct: 321 QVFEPLTHLCQEHGLAFEVVDLRWGVRQESVEDHCIVSICMDEIK 365
>SB_23937| Best HMM Match : PAN (HMM E-Value=0.12)
Length = 270
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 TDLEDSVMRNLNASITQYPVDKNVQKTIDII--QTDLQCCG 377
T L S++R + YP+D KTID+ TDL CG
Sbjct: 211 TALMSSMVRVCFRTNKSYPMDMGASKTIDVYCQMTDLLNCG 251
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 584 EPKRYR-LQRRRAPYQCPSC 528
+P YR + R+ PY CPSC
Sbjct: 499 DPDTYRCIDSRKIPYHCPSC 518
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Frame = +3
Query: 291 LNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW---------ADHGLPIPSTCCSAQ 443
L+ ++ YP ++ + + +Q +L+CCG + DW +G +P +CC
Sbjct: 257 LDTALKDYP-EQGFKDAWNDMQKNLKCCGSRNYTDWFMVAWAGPNTKNG-SVPESCCKDT 314
Query: 444 EINDGVVAACTENSTNFHSKGC 509
++ + + T +GC
Sbjct: 315 KVKSCNLEVLSHPETINSEQGC 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,709
Number of Sequences: 59808
Number of extensions: 335624
Number of successful extensions: 1019
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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