Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20218
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    51   1e-08
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 18/38 (47%), Positives = 29/38 (76%)
 Frame = +1

Query: 151 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYISIR 264
           CCGA++E+HCM ITF+ FLL I + ++AV +  +I ++
Sbjct: 70  CCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVK 107



 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 24/67 (35%), Positives = 41/67 (61%)
 Frame = +3

Query: 312 YPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTN 491
           Y ++   +  ID IQ +LQCCG++S +D+ D   PIP++CC++ E N       T + +N
Sbjct: 126 YFLNSESKDFIDFIQKNLQCCGVHSLSDYNDK--PIPASCCNSPENN-------TCSISN 176

Query: 492 FHSKGCL 512
            ++ GC+
Sbjct: 177 SYTNGCV 183


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 274 SSKSVCLCNQRCPQPVQPRI*SRG 203
           S+ +VC+C ++CP+  +P   S G
Sbjct: 99  STIAVCVCMRKCPRRHRPVCASNG 122


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 196 SVFLLIIFVAELAVGIAGYISIRTWKI 276
           ++F++ + VA+L VG+A      TW++
Sbjct: 101 NMFIVSLAVADLMVGLAVLPFSATWEV 127


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 403 SAQSAGLFIPQHCKSVCMISIVFWT 329
           S+QSA + I +   ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 578 KRYRLQRRRAPYQCPSCEQ 522
           + YR      PYQC  C +
Sbjct: 109 RHYRTHTGEKPYQCEYCSK 127



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 569 RLQRRRAPYQCPSCEQ 522
           R+  +  PY+C  CE+
Sbjct: 140 RIHTKERPYKCDVCER 155


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 458  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 360
            A+ID L  A R        GP GR+V +A L V
Sbjct: 967  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 999


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 458  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 360
            A+ID L  A R        GP GR+V +A L V
Sbjct: 963  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 995


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 301 EAFRLRITESSKSVCLCNQRCPQPVQPRI*SRGILKT 191
           +A ++ I++S+K +   + R  +  +  +  +GI+KT
Sbjct: 556 QAMQIHISQSTKELLSPSYRVKERGEIEVKGKGIMKT 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,216
Number of Sequences: 438
Number of extensions: 3117
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)