Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20218
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55770.1 68418.m06951 DC1 domain-containing protein contains ...    27   9.2  
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    27   9.2  
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    27   9.2  

>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 695

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 336 KTIDIIQTDLQCCGINSPADWADHGLPI 419
           K  +I+Q DL+C  I  P D+  H  P+
Sbjct: 481 KENNIVQLDLRCASIIEPFDYQGHEHPL 508


>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 565 SNAGEHHTNVLHVNNQFSK-HPFEWKLVEFSVQAATTPSLISWAEQHVLGMGRP*SAQSA 389
           SN GE+ TN++H+       H + W    FS +A+    +   AE+       P S Q  
Sbjct: 348 SNTGENQTNIVHLPALTRNIHQYAWD-ASFSSRASNPSGIGMPAERLGPQWETPRSNQEQ 406

Query: 388 GLFIP 374
            LF P
Sbjct: 407 PLFAP 411


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 565 SNAGEHHTNVLHVNNQFSK-HPFEWKLVEFSVQAATTPSLISWAEQHVLGMGRP*SAQSA 389
           SN GE+ TN++H+       H + W    FS +A+    +   AE+       P S Q  
Sbjct: 348 SNTGENQTNIVHLPALTRNIHQYAWD-ASFSSRASNPSGIGMPAERLGPQWETPRSNQEQ 406

Query: 388 GLFIP 374
            LF P
Sbjct: 407 PLFAP 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,478
Number of Sequences: 28952
Number of extensions: 229266
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)