Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20215
         (522 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.8  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   6.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.7  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 8   APNKMKLLVVFAMCMLAASA 67
           APN  +  VV+A C L A+A
Sbjct: 123 APNGHQTQVVYASCKLQAAA 142


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 252 WVLLQAVGRQRTGNC 296
           W+ L+ V  + T NC
Sbjct: 113 WIFLETVANENTTNC 127


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 333 NDESKV*WXVLSNNFLSVADPQLVAVPMVF 244
           +DE +V   V  N +L   DP+ + V + F
Sbjct: 315 DDEQQVPHIVKGNQWLGFDDPKSIQVKVEF 344


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 158 VRQSLEYESQGKGSIIQNVVNNLIIDKRRNT 250
           V   L+   +G    I  V+++ ++D R+NT
Sbjct: 144 VHDILQPGVKGLHGPITRVIDSKVVDSRKNT 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,970
Number of Sequences: 336
Number of extensions: 2298
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)