Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20215
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 33 0.020
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 1.7
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 2.2
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 3.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 3.0
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 3.9
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 5.2
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 5.2
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 33.5 bits (73), Expect = 0.020
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 50 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 205
++ A+AG+ LS + N+D+ K+ L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 175 FQALTDSTVVVAGEDAVVQFLLEVLV 98
F +T V+V EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 98 NQDLEEKLYNSILTGDYDSAVRQSLE 175
+ DLE+ + ++LTGD SAV+ LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 161 RQSLEYESQGKGSIIQNVVNNLIIDKRRNTMGTATSC--GSATDRKLLESTXH*TLDSSL 334
++S++ ES K S +NV+ +D +RN T A ++L+E + SL
Sbjct: 62 KESIKDESSAKSSETENVLEFATLDSKRNVNDTEVESMDSQAYKKELIEQIMIAQTECSL 121
Query: 335 AGNYVKIIYRNY 370
A + ++ +
Sbjct: 122 ALDMTSLLLSKF 133
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 63 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 173
AR SLNY ++ + SRRN ++P S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 441 LHHRRRQFSHSRDWLWNPS 385
+HH R F DW NPS
Sbjct: 569 IHHGERHFDSGNDWHGNPS 587
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 510 QKYHSVVLPQGNELPTDEFXXACLHHRRRQFSHSRDW 400
++Y++ +L G + ++F L+ + R+ HSRDW
Sbjct: 232 KQYNNALLSIGKKFQLNDFI--ALYEKDREQLHSRDW 266
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 24 NFSLYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRA 170
N S + C SP A A + P+TL T ASS T+ + V A
Sbjct: 242 NDSFMVGCIYSP-AEAKEHVPKTLRNSNKDLEMTDASSSETSMSIPVHA 289
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 394 PQPIPRMRELPTAMVXTSXLELVSW 468
P P+P + +LP M + L+SW
Sbjct: 93 PNPLPELLKLPGPMEEDEVVSLLSW 117
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 256 THGVPSLVNDQVVNYILDDG 197
TH +PS+V D +YI +G
Sbjct: 248 THSLPSVVADDAADYIPSEG 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,238
Number of Sequences: 5004
Number of extensions: 38757
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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