Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20215
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 29 2.3
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363... 29 3.0
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437... 28 4.0
12_01_0465 + 3640736-3640817,3640898-3641088,3641266-3641789,364... 27 6.9
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 27 6.9
04_04_0018 - 22178972-22179179,22179264-22179502 27 9.1
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 27 9.1
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 237 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 73
L+++ L+ W + P L + S L SP + SF S + S D++T
Sbjct: 36 LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95
Query: 72 TPALAASMHIANTTR 28
P A+ +A TTR
Sbjct: 96 VPTTTAAARVAATTR 110
>02_02_0468 +
10633992-10634064,10635998-10636130,10636244-10636315,
10637028-10637171,10637271-10637342,10637451-10637516,
10637603-10637673,10637796-10637936,10638347-10638688,
10638989-10639383,10639481-10639795
Length = 607
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 116 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMGTATSCGSATDRKL 295
K+Y +L AV++ +YES G + V + + RN + C + T+R L
Sbjct: 297 KVYKGVLPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLKLIGFCTTQTERLL 356
Query: 296 L 298
+
Sbjct: 357 V 357
>02_01_0590 +
4376785-4377009,4378153-4378407,4378514-4378641,
4378738-4378779,4378875-4378956,4379035-4379103,
4379180-4379350,4379430-4379495,4379777-4379845,
4379928-4380056,4380845-4380881,4380906-4380997,
4381541-4381602,4381855-4381918
Length = 496
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +2
Query: 65 AGVVELSADTSNQDLEEKLYNSILTGDYDSAVR----QSLEYESQGKGSIIQNVVNNLII 232
+G+ L ++ +D +E L ++I G + V + LE + + +++ + + I
Sbjct: 417 SGLHTLEQVSNCKDFDEYLKSAIQKGRFKVTVEGAEVEKLEVATPREKELLERIASLERI 476
Query: 233 DKRRNTMGTAT 265
DKR N M TAT
Sbjct: 477 DKRSNVMPTAT 487
>12_01_0465 +
3640736-3640817,3640898-3641088,3641266-3641789,
3643726-3644029
Length = 366
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 486 PQGNELPTDEFXXACLHHRRRQFSHS 409
P G +P D+ CL+ R+R+F H+
Sbjct: 188 PDGRIVPADKPSQTCLNKRQREFLHA 213
>04_01_0613 -
8042568-8042686,8043107-8043206,8043550-8043594,
8043691-8043770,8045082-8046322,8047077-8047507
Length = 671
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = +2
Query: 26 LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 205
+LV + S ++ + A ++ ++ EKLYN + + + Y GK I
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255
Query: 206 QNVVNNL 226
++ N +
Sbjct: 256 HSIFNGM 262
>04_04_0018 - 22178972-22179179,22179264-22179502
Length = 148
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 39 LRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVR 167
L CAC+PP R + + + R +AS T L VR
Sbjct: 18 LSCACAPPTRGTRRRRLAVAVRVRVRVRASASEAMATEKLGVR 60
>03_05_0834 - 28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 116 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMGTATSCGSATDRKL 295
K+Y L AV++ +YES G + V + + RN + C + T+R L
Sbjct: 863 KVYKGALPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLRLIGFCTTQTERLL 922
Query: 296 L 298
+
Sbjct: 923 V 923
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,543
Number of Sequences: 37544
Number of extensions: 280222
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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