Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20215
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   28   5.4  
SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)             25   6.1  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        27   7.1  
SB_55907| Best HMM Match : Extensin_2 (HMM E-Value=0.73)               27   9.4  
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 54   SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 194
            +PP+R S    R+     SR    T S+P T +  S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404


>SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)
          Length = 636

 Score = 25.0 bits (52), Expect(2) = 6.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 170 SSDGQHCRSRR*GCCC 123
           S DG+HC  RR G  C
Sbjct: 435 SGDGEHCSPRREGVSC 450



 Score = 21.0 bits (42), Expect(2) = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 287 CPLPTHSL*QYPWCS 243
           CP   +++ QYPW S
Sbjct: 418 CPENLNAVDQYPWSS 432


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +3

Query: 105 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 200
           TSR NC   + P +T ++S      +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692


>SB_55907| Best HMM Match : Extensin_2 (HMM E-Value=0.73)
          Length = 469

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 489 LPQGNELPTDEFXXACLHHRRRQFSHSRDWL 397
           L +G  +PT       LHH R  + HSR W+
Sbjct: 112 LQRGRGIPTS---IRPLHHHRHTYQHSRGWV 139


>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 219 LTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRSWLEVSA 85
           +  F  ++PL  L+YS+  RTA+   P    ++ +  R+W E  A
Sbjct: 185 VVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRNWKEAGA 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,908
Number of Sequences: 59808
Number of extensions: 307574
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)