Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20214
         (482 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I6Y0 Cluster: Cuticle protein; n=1; Bombyx mori|Rep: ...    45   0.001
UniRef50_Q855F1 Cluster: Gp59; n=1; Mycobacterium phage Che8|Rep...    35   0.84 
UniRef50_A4LQL7 Cluster: Putative uncharacterized protein; n=2; ...    34   1.9  
UniRef50_Q1D6S3 Cluster: Methyl-accepting chemotaxis protein (MC...    33   4.5  
UniRef50_A7RU75 Cluster: Predicted protein; n=1; Nematostella ve...    33   4.5  

>UniRef50_Q8I6Y0 Cluster: Cuticle protein; n=1; Bombyx mori|Rep:
           Cuticle protein - Bombyx mori (Silk moth)
          Length = 311

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 22/38 (57%), Positives = 22/38 (57%)
 Frame = +2

Query: 2   VPAAIQAALDXXXXXXXXXXXXXXXXPQHVYHPTQAPI 115
           VPAAIQAALD                PQHVYHPTQAPI
Sbjct: 209 VPAAIQAALDQNAKEEAAQAEAEKNKPQHVYHPTQAPI 246



 Score = 39.1 bits (87), Expect = 0.051
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +1

Query: 256 QSLSIPVIPPRTKLSKLR 309
           QSLSIPVIPPRTKLSKLR
Sbjct: 294 QSLSIPVIPPRTKLSKLR 311


>UniRef50_Q855F1 Cluster: Gp59; n=1; Mycobacterium phage Che8|Rep:
           Gp59 - Mycobacterium phage Che8
          Length = 268

 Score = 35.1 bits (77), Expect = 0.84
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 218 GSXKELEWDSKLELGWGSKMGLGWDSM*VLGSGSK*APVWDDKRVVA 78
           GS + + W S   + WGS   + W S  V+  GS     WD   VVA
Sbjct: 54  GSARVVAWGSAHVVAWGSARVVAWGSAHVVAWGSAHVVAWDSAHVVA 100


>UniRef50_A4LQL7 Cluster: Putative uncharacterized protein; n=2;
           Burkholderia pseudomallei|Rep: Putative uncharacterized
           protein - Burkholderia pseudomallei 305
          Length = 116

 Score = 33.9 bits (74), Expect = 1.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 197 WDSKLELGWGSKMGLGWDSM 138
           W+   ELGWG+++GLGW S+
Sbjct: 27  WELGWELGWGARLGLGWASV 46


>UniRef50_Q1D6S3 Cluster: Methyl-accepting chemotaxis protein (MCP)
           signaling domain; n=1; Myxococcus xanthus DK 1622|Rep:
           Methyl-accepting chemotaxis protein (MCP) signaling
           domain - Myxococcus xanthus (strain DK 1622)
          Length = 737

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 196 GIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGMINVL 83
           G+V WSLG V  WG   +    LG +V RR   ++  L
Sbjct: 391 GLVGWSLGNVTHWGYVALTLSLLG-IVTRRSIMVVRTL 427


>UniRef50_A7RU75 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 312

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 16/62 (25%), Positives = 23/62 (37%)
 Frame = -1

Query: 272 GMDSDWSLGRVVGRGPELGSXKELEWDSKLELGWGSKMGLGWDSM*VLGSGSK*APVWDD 93
           G D +  +G    R  E    + +EWD    + W     +GWD    +G        WD 
Sbjct: 22  GWDQNRRIGWDQNRRIEWDQNRRIEWDQNRRIEWDQNRRIGWDQHRRIGWDQNRRIGWDQ 81

Query: 92  KR 87
            R
Sbjct: 82  NR 83



 Score = 32.7 bits (71), Expect = 4.5
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -1

Query: 224 ELGSXKELEWDSKLELGWGSKMGLGWDSM*VLGSGSK*APVWDDKR 87
           E    + +EWD    +GW     +GWD    +G        WD  R
Sbjct: 46  EWDQNRRIEWDQNRRIGWDQHRRIGWDQNRRIGWDQNRRIEWDQNR 91



 Score = 32.3 bits (70), Expect = 5.9
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 209 KELEWDSKLELGWGSKMGLGWDSM*VLGSGSK*APVWDDKR 87
           + +EWD    +GW     +GWD    +G        WD  R
Sbjct: 3   RRIEWDQNRRIGWDQHRRIGWDQNRRIGWDQNRRIEWDQNR 43


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,289,504
Number of Sequences: 1657284
Number of extensions: 5021461
Number of successful extensions: 14046
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13986
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)