Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20214
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   4.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   4.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.5  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   4.5  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 213 TTQLRPPTYYPT 248
           T ++RPP  YPT
Sbjct: 80  TVRVRPPKVYPT 91


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 213 TTQLRPPTYYPT 248
           T ++RPP  YPT
Sbjct: 394 TVRVRPPKVYPT 405


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 213 TTQLRPPTYYPT 248
           T ++RPP  YPT
Sbjct: 627 TVRVRPPKVYPT 638


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 213 TTQLRPPTYYPT 248
           T ++RPP  YPT
Sbjct: 627 TVRVRPPKVYPT 638


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 349 KICIRSFKHYXLFTVTWIVLFL 284
           ++C   +  + L  V WIVL L
Sbjct: 292 EVCNAGYLPFILLQVAWIVLHL 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,355
Number of Sequences: 336
Number of extensions: 1213
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)