Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20214
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0176 - 23329589-23331043                                         28   3.4  
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015...    28   3.4  
08_02_0663 + 19797646-19798117,19798168-19798190                       27   6.0  
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    27   7.9  

>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 222 LRPPTYYPTQAPVTIHPSHT 281
           L PP++YPT  P T  P H+
Sbjct: 51  LSPPSHYPTSPPKTPSPGHS 70


>04_03_0742 +
           19200045-19200053,19200158-19200437,19201331-19201545,
           19201705-19201792,19202277-19202842
          Length = 385

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 228 PPTYYPTQAPVTIHPSHTP 284
           PP Y P+  P   HPSH P
Sbjct: 352 PPPYQPSYPPYPSHPSHHP 370


>08_02_0663 + 19797646-19798117,19798168-19798190
          Length = 164

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 266 DSDWSLGRVVGRGPELGS 213
           DSDWS+G +  +GPEL S
Sbjct: 104 DSDWSIGWLEPQGPELHS 121


>11_06_0109 + 20202629-20205452,20206354-20206578,20207208-20208091,
            20208692-20208814
          Length = 1351

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 202  LSGIVSWSLGGVVRWGLGGIVCRCL 128
            +SG+  WSLGGV+R  +  I+  CL
Sbjct: 1276 VSGLCDWSLGGVLRHIVQKIMESCL 1300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,783,588
Number of Sequences: 37544
Number of extensions: 139544
Number of successful extensions: 355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)