Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20214
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)              27   6.1  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 208 RSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 95
           + + G+    +GGV    +GG+  +C+G V  +R+ G+
Sbjct: 52  KRIGGVYEKHIGGVYEKRIGGVYEKCIGGVYEKRIGGV 89


>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1483

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 257  WSLGRVVGRGPELGSXKELEWDSKLELGWGS 165
            WS GR VGR  E G   + + DS+ E G+ S
Sbjct: 916  WSRGRPVGREDEGGESDDSDTDSEEEGGYDS 946


>SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 183 QLTIPLKLLXTTQLRPPTYY--PTQAPVTI-H-PSHTPK-NKTIQVTVKS 317
           ++  P +++  T  RP T+Y   T +PV + H P H P  + T QVTV+S
Sbjct: 265 EIVFPDQIIDRTTKRPSTFYDGQTNSPVGVCHIPMHDPYCSVTKQVTVES 314


>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
          Length = 549

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 228 PPTYYPTQAPVTIHPSHTPKNKT 296
           PP + P+  P    PSHTP   T
Sbjct: 490 PPVFTPSHTPPVFTPSHTPPVST 512


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 302  SYGKKXIVFKRSYANFTRHETKKCDXNYD 388
            SYGK+ +   R+YAN  +H   +C   Y+
Sbjct: 1861 SYGKRPLACSRAYAN--QHRFSRCQETYN 1887


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,166
Number of Sequences: 59808
Number of extensions: 155311
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)