Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20214
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    29   1.8  
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    28   3.1  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC006615-6|AAK68228.1|  531|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 192 IPLKLLXTTQLRPPTYYPTQAPVTIHPSH-TPKNKTIQVTVK 314
           + L  L TT++ PP   PTQ+P    P    P  K  Q+TV+
Sbjct: 670 VELPSLPTTKMAPPQPVPTQSPPLPTPKRLAPVFKPSQITVQ 711


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 198 LKLLXTTQLRPPTYYPTQAPVTIHPSH-TPKNKTIQVTVK 314
           L  L TT++ PP   PTQ+P    P    P  K  Q+TV+
Sbjct: 528 LPSLPTTKMAPPQPVPTQSPPLPTPKRLAPVFKPSQITVQ 567


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 192 IPLKLLXTTQLRP-PTYYPTQAPVTIHPSHTPKNK 293
           +PL ++ TTQ  P PT  PT  PV +  + TP+ K
Sbjct: 764 VPLPVVQTTQTAPKPTLPPTTLPV-LTTNKTPRTK 797


>AC006615-6|AAK68228.1|  531|Caenorhabditis elegans Hypothetical
           protein C36B7.2 protein.
          Length = 531

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 362 SRVS*NLHTIV*TLSTFYRNLDSFVLGGMTGMDSDWSLGRVV 237
           SR +   H  V   S FYR  ++FV G   G    WS G  V
Sbjct: 342 SRFAKPYHDHVQCQSMFYRAPEAFVRGRYNGATDMWSFGCTV 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,492,963
Number of Sequences: 27780
Number of extensions: 113938
Number of successful extensions: 271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)