Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20214
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61660.1 68418.m07736 glycine-rich protein                          28   2.9  
At5g18130.2 68418.m02128 expressed protein similar to unknown pr...    28   2.9  
At5g18130.1 68418.m02129 expressed protein similar to unknown pr...    28   2.9  
At5g48380.1 68418.m05978 leucine-rich repeat family protein / pr...    28   3.8  
At3g28450.1 68416.m03554 leucine-rich repeat transmembrane prote...    27   6.6  

>At5g61660.1 68418.m07736 glycine-rich protein
          Length = 134

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 257 WSLGRVVGRGPELGSXKELEWDSKLELGWGSKMGLGW 147
           WS G + G   E GS +   W+     GWGS  G GW
Sbjct: 25  WSRGNMPG---ESGSGRGPNWE--YNWGWGSAPGSGW 56


>At5g18130.2 68418.m02128 expressed protein similar to unknown
           protein (gb|AAF00631.1)
          Length = 251

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 284 GGMTGMDSDWSLGRVVGRGPELGSXKELEWD 192
           GG+ G   D  +G  V    +L S KE++WD
Sbjct: 151 GGLGGESYDEIMGSEVEESSDLSSKKEVDWD 181


>At5g18130.1 68418.m02129 expressed protein similar to unknown
           protein (gb|AAF00631.1)
          Length = 280

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 284 GGMTGMDSDWSLGRVVGRGPELGSXKELEWD 192
           GG+ G   D  +G  V    +L S KE++WD
Sbjct: 151 GGLGGESYDEIMGSEVEESSDLSSKKEVDWD 181


>At5g48380.1 68418.m05978 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 620

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 215 SXKELEWDSKLELGWGSKMGLGW 147
           S K L+W S+L++  G+  GL W
Sbjct: 394 SFKPLDWPSRLKIAIGTAKGLAW 416


>At3g28450.1 68416.m03554 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAD02501
           from [Arabidopsis thaliana]
          Length = 605

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 206 ELEWDSKLELGWGSKMGLGW 147
           EL+W ++  +G G+  GL W
Sbjct: 397 ELDWSTRFRIGLGAARGLAW 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,158,538
Number of Sequences: 28952
Number of extensions: 112279
Number of successful extensions: 264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)