Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20212
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    71   6e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    48   5e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    40   1e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    39   2e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    38   5e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    37   0.001
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    37   0.001
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    36   0.003
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    35   0.004
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    35   0.004
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    33   0.015
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    31   0.045
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    27   0.98 
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    27   1.3  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   5.2  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    24   9.1  

>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 70.9 bits (166), Expect = 6e-14
 Identities = 30/38 (78%), Positives = 33/38 (86%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           I D GFEHPSEVQ  CIPQ++LG D+LCQAKSGMGKTA
Sbjct: 66  ITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTA 103



 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 163 STEVAPKKEVKGSYVSIHSSGFRDFLLKPE 252
           + E   K + KGSYV IHS+GFRDFLLKPE
Sbjct: 32  TAENGEKSDKKGSYVGIHSTGFRDFLLKPE 61


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 48.0 bits (109), Expect = 5e-07
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           I + GFE PS +Q E IP A+ G DIL +AK+G GKTA
Sbjct: 59  IFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTA 96


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           GFE P+++Q + IP A+LG DI+  A +G GKTA
Sbjct: 278 GFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTA 311


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           G+E PS VQ   I Q   G D++ QA+SG GKTA
Sbjct: 40  GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTA 73


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 37.9 bits (84), Expect = 5e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 291 SEVQHECIPQAVLGMDILCQAKSGMGKT 374
           +E+Q +CIP A+ G DIL  AK+G GKT
Sbjct: 63  TEIQKQCIPSALKGRDILGAAKTGSGKT 90


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           I + GFE  +E+Q   IP  + G D+L  AK+G GKT
Sbjct: 104 IKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKT 140


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           GFE PS +Q   I   +   D+L QA+SG GKTA
Sbjct: 38  GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTA 71


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 35.5 bits (78), Expect = 0.003
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           G+E P+ +Q + IP    G D++  AK+G GKT
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKT 469


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           GF  P  +Q   IP+A +G DI+ +A +G GKT
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKT 173


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           I   GF+ P+ +Q + IP  + G D++  A++G GKTA
Sbjct: 84  IFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTA 121


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 33.1 bits (72), Expect = 0.015
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           GF+ P+ +Q E IP  +   D++  A++G GKTA
Sbjct: 65  GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTA 98


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 31.5 bits (68), Expect = 0.045
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           GFE P+ +Q +  P A+ G D++  + +G GKT
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVGISATGSGKT 173


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 288 PSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           P+++Q   I Q + G + +  AK+G GKTA
Sbjct: 30  PTDIQEGVIAQILEGRNCIGGAKTGSGKTA 59


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           GF+  + VQ   IP  +   D++ +A +G GKT
Sbjct: 20  GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKT 52


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 305 VLNFGRMLKTAINNSAEISGLSKKSLKPELW 213
           VL  G +L TA  NSA IS    K  KP +W
Sbjct: 84  VLENGSVL-TANYNSASISRSKAKDEKPHVW 113


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 164 LPKWRQRRRLKDPTYPSTVLVL 229
           LP W  RR++ D    S V+V+
Sbjct: 577 LPAWESRRKIMDAIQHSQVVVI 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,408
Number of Sequences: 5004
Number of extensions: 20054
Number of successful extensions: 63
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)