Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20212
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)                    82   2e-16
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   2e-16
SB_17563| Best HMM Match : DEAD (HMM E-Value=0)                        47   4e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0)                         47   4e-06
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        42   1e-04
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   7e-04
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)                   38   0.002
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         37   0.005
SB_52320| Best HMM Match : DEAD (HMM E-Value=0)                        37   0.005
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.008
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.044
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  33   0.077
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              33   0.077
SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)                    27   5.1  
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    27   6.7  
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)                  26   8.8  
SB_13635| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         26   8.8  
SB_7920| Best HMM Match : Sec15 (HMM E-Value=2.3)                      26   8.8  

>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
          Length = 475

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           IVD GFEHPSEVQHECIPQA+LGMDI+CQAKSGMGKTA
Sbjct: 62  IVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTA 99



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +1

Query: 181 KKEVKGSYVSIHSSGFRDFLLKPE 252
           KK+VKG+YVSIHSSGFRDFLLKPE
Sbjct: 34  KKDVKGTYVSIHSSGFRDFLLKPE 57


>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           IVD GFEHPSEVQHECIPQA+LGMDI+CQAKSGMGKTA
Sbjct: 62  IVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTA 99



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +1

Query: 181 KKEVKGSYVSIHSSGFRDFLLKPE 252
           KK+VKG+YVSIHSSGFRDFLLKPE
Sbjct: 34  KKDVKGTYVSIHSSGFRDFLLKPE 57


>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           I + GF+ PS +Q E IP A+ G DIL +AK+G GKTA
Sbjct: 62  IFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTA 99


>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           I + GF+ PS +Q E IP A+ G DIL +AK+G GKTA
Sbjct: 62  IFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTA 99


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +3

Query: 270 DXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           + GFE PS +Q + IP    G+D++ QAKSG GKT
Sbjct: 30  EAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKT 64


>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +3

Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           GFE PS +Q   I   + G D++ QA+SG GKTA
Sbjct: 16  GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTA 49


>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
          Length = 96

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 270 DXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           + GF HP+ +Q   IP A++G D+   A +G GKTA
Sbjct: 27  ELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTA 62


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 267 VDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           V  G + P+E+Q  C+P  + G D +  AK+G GKTA
Sbjct: 23  VAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTA 59


>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 340

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           ++  GF  P+++Q + IP A+ G D+L  AK+G GKT
Sbjct: 65  LMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKT 101


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           I D GF   +E+QH+ I   + G D+L  AK+G GKT
Sbjct: 587 IKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKT 623


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 279 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           +  P+++Q + +P A+ G DI+  AK+G GKTA
Sbjct: 537 YTQPTQIQCQALPIALSGRDIIGIAKTGSGKTA 569


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 264 IVDX-GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
           IVD  G++ P+ +Q + IP  +   DI+  A++G GKTA
Sbjct: 115 IVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTA 153


>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 264 IVDXGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTA 377
           + D GF  PS++Q   +P  +    ++++ Q++SG GKTA
Sbjct: 118 VYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTA 157


>SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 86  SKSWLTTTIFSTTKMKNKQINRLLTGLPKWRQRRRLKDPTYPST 217
           +KS  T    S TK +++  +      P W++R R K  T P+T
Sbjct: 661 TKSARTYLALSRTKRQSRSASTSRIRYPTWKRRNRAKRKTLPAT 704


>SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 697

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 101 TTTIFSTTKMKNKQINRLLTGLPKWRQRRRLKDPTYPS 214
           T+T + TTK    Q+N  +T  P    RR LK P  PS
Sbjct: 651 TSTNYGTTKRATGQVNVEITAKPS--LRRCLKTPHMPS 686


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 125  KMKNKQINRLLTGL 166
            ++KNK +NRLLTGL
Sbjct: 1396 RLKNKNLNRLLTGL 1409


>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
          Length = 978

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 288 PSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           P+ +Q   IP+ +    ++C A++G GKT
Sbjct: 401 PTVIQMVTIPKIIHRHHVICAAQTGSGKT 429


>SB_13635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 304 TNAFRKPXSVW--TYFAKPSPVWVRQP 378
           T    KP S+W  T  +KPS +WV  P
Sbjct: 26  TTLTSKPSSLWVTTLTSKPSSLWVTSP 52


>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 375 LSYPYRTWLGKVCPYRXRLAECIRVEL 295
           LS P+  W  ++ P     A C+R+EL
Sbjct: 589 LSLPFVAWSVRIFPLAWNTAVCMRIEL 615


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 279 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
           F+ P+ +Q + +   + G DI+  A++G GKT
Sbjct: 92  FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKT 123


>SB_7920| Best HMM Match : Sec15 (HMM E-Value=2.3)
          Length = 551

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 104 TTIFSTTKMKNKQINRLLTGLPKW 175
           T I S T  K++ I+RLL  LP W
Sbjct: 314 TRIISGTWAKDEDISRLLRTLPNW 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,996,085
Number of Sequences: 59808
Number of extensions: 151557
Number of successful extensions: 328
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)