Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20212
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 81 2e-16
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 81 2e-16
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 48 2e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 48 2e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 46 6e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 46 6e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 46 6e-06
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 40 5e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 39 0.001
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 39 0.001
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 38 0.003
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 37 0.004
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 37 0.004
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 37 0.004
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 37 0.005
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 36 0.007
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 36 0.007
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 36 0.012
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 36 0.012
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.012
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 35 0.016
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 35 0.016
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 34 0.027
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 34 0.027
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 34 0.027
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 34 0.027
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 34 0.027
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 34 0.036
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 33 0.083
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 32 0.11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 32 0.15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 31 0.19
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 31 0.25
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 30 0.44
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 30 0.59
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 30 0.59
At3g06910.1 68416.m00820 Ulp1 protease family protein similar to... 30 0.59
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 29 0.78
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 29 1.0
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 1.0
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 27 4.1
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 27 4.1
At2g33780.1 68415.m04143 VQ motif-containing protein contains PF... 26 7.2
At1g51820.1 68414.m05841 leucine-rich repeat protein kinase, put... 26 7.2
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 26 9.6
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 81.4 bits (192), Expect = 2e-16
Identities = 34/38 (89%), Positives = 37/38 (97%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
IVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMGKTA
Sbjct: 61 IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTA 98
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +1
Query: 190 VKGSYVSIHSSGFRDFLLKPE 252
VK YV IHSSGFRDFLLKPE
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPE 56
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 81.4 bits (192), Expect = 2e-16
Identities = 34/38 (89%), Positives = 37/38 (97%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
IVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMGKTA
Sbjct: 61 IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTA 98
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +1
Query: 190 VKGSYVSIHSSGFRDFLLKPE 252
VK YV IHSSGFRDFLLKPE
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPE 56
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.4 bits (110), Expect = 2e-06
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
I + GFE PS +Q E IP A+ G DIL +AK+G GKTA
Sbjct: 146 IYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTA 183
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.4 bits (110), Expect = 2e-06
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
I + GFE PS +Q E IP A+ G DIL +AK+G GKTA
Sbjct: 146 IYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTA 183
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
I + GFE PS +Q E IP A+ G DIL +AK+G GKT
Sbjct: 139 IYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
I + GFE PS +Q E IP A+ G DIL +AK+G GKT
Sbjct: 139 IYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
I + GFE PS +Q E IP A+ G DIL +AK+G GKT
Sbjct: 169 IYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 205
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 39.9 bits (89), Expect = 5e-04
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
+ D G++ PSE+Q + + G D++ QA+SG GKT+
Sbjct: 37 VYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTS 74
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
+ + GFE PS +Q + + G D++ QA+SG GKT+
Sbjct: 50 VYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 270 DXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
D GF+ PS Q CIP + G D++ A++G GKT
Sbjct: 97 DSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 270 DXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
+ G P+ VQ C+P+ + G D+L A++G GKTA
Sbjct: 75 ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTA 110
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
G++ P+ +Q CIP A+ G D+ A +G GKTA
Sbjct: 186 GYKKPTPIQAACIPLALTGRDLCASAITGSGKTA 219
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
GFE PS +Q I G+D++ QA+SG GKTA
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
GFE PS +Q I G+D++ QA+SG GKTA
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
GFE PS +Q I G+D++ QA+SG GKTA
Sbjct: 60 GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTA 93
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 36.3 bits (80), Expect = 0.007
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +3
Query: 186 GG*RILRIHPQFWFXXXXXXXXXXXXIVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGM 365
GG LR P F + GF PS +Q + P A+ DI+ AK+G
Sbjct: 218 GGPNFLRCPPAAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGS 277
Query: 366 GKT 374
GKT
Sbjct: 278 GKT 280
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 36.3 bits (80), Expect = 0.007
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
I D GFE + VQ +P + G D+L +AK+G GKT
Sbjct: 397 IKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKT 433
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.5 bits (78), Expect = 0.012
Identities = 14/33 (42%), Positives = 25/33 (75%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
G+++PS++Q E +P A+ G D++ A++G GKT
Sbjct: 28 GWKNPSKIQAEALPFALEGKDVIGLAQTGSGKT 60
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 35.5 bits (78), Expect = 0.012
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
I D GF+ + VQ +P + G DIL +AK+G GKT
Sbjct: 95 IEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKT 131
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.5 bits (78), Expect = 0.012
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
GFE P+ VQ + IP + G D+L A +G GKT
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKT 81
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 35.1 bits (77), Expect = 0.016
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
I D G+E + VQ +P + G D+L +AK+G GKT
Sbjct: 69 IKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKT 105
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 35.1 bits (77), Expect = 0.016
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
G E P+ +Q IP + G D++ +AK+G GKT
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKT 97
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 34.3 bits (75), Expect = 0.027
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
I + GF +++Q + IP ++G D+L A++G GKT
Sbjct: 169 IKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKT 205
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 34.3 bits (75), Expect = 0.027
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
++ GF P+ +Q + P A+ G DI+ AK+G GKT
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKT 209
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 34.3 bits (75), Expect = 0.027
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
++ GF P+ +Q + P A+ G DI+ AK+G GKT
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKT 209
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 34.3 bits (75), Expect = 0.027
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
++ GF P+ +Q + P A+ G DI+ AK+G GKT
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKT 209
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 34.3 bits (75), Expect = 0.027
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
G++ P+ +Q + +P + G+D++ A++G GKTA
Sbjct: 47 GYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTA 80
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 33.9 bits (74), Expect = 0.036
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 333 MDILCQAKSGMGKTA 377
MD++CQAKSGMGKTA
Sbjct: 1 MDVICQAKSGMGKTA 15
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 32.7 bits (71), Expect = 0.083
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 279 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 377
+E P+ +Q + +P + G D++ AK+G GKTA
Sbjct: 248 YEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTA 280
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.3 bits (70), Expect = 0.11
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
GF P++VQ +P + G D + Q+ +G GKT
Sbjct: 129 GFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKT 161
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 270 DXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
D + ++VQ IP A+ G DIL A++G GKT
Sbjct: 88 DAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKT 122
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
++ GF P+ +Q + P A+ DI+ AK+G GKT
Sbjct: 450 LLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKT 486
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 31.1 bits (67), Expect = 0.25
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
+ + GF+ P+ +Q + IP + G + A +G GKT
Sbjct: 156 LAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKT 192
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 30.3 bits (65), Expect = 0.44
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 270 DXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
D G HP+ +Q + +P + G D++ A +G GKT
Sbjct: 114 DKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKT 148
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 29.9 bits (64), Expect = 0.59
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
G H +Q + A+ G DI+ +AK+G GKT
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKT 153
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 29.9 bits (64), Expect = 0.59
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 264 IVDXGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
I + GF++ +++Q I + G D+L A++G GKT
Sbjct: 104 IKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKT 140
>At3g06910.1 68416.m00820 Ulp1 protease family protein similar to
sentrin/SUMO-specific protease [Homo sapiens]
GI:6906859; contains Pfam profile PF02902: Ulp1 protease
family, C-terminal catalytic domain
Length = 502
Score = 29.9 bits (64), Expect = 0.59
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 329 EXGLRNAFVLNFGRMLKTAINNSAEISGLSKKSLKPELWMD 207
E +R AF N +L T N++ +I+G + LKP W++
Sbjct: 277 ETAVRRAFSANDSNILVTHKNSNIDITGKILRCLKPGKWLN 317
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 29.5 bits (63), Expect = 0.78
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 279 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
FE PS +Q P + G D++ AK+G GKT
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKT 165
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 279 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
+E P +Q + +P + G D + AK+G GKT
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGVAKTGSGKT 447
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 279 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
+E P +Q + +P + G D + AK+G GKT
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKT 580
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
GFE + VQ E IP D++ A +G GKT
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKT 67
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 276 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 374
GFE + VQ E IP D++ A +G GKT
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKT 68
>At2g33780.1 68415.m04143 VQ motif-containing protein contains
PF05678: VQ motif
Length = 204
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 104 TTIFSTTKMKNKQINRLLTGLPKWRQRRRLKDPTYP 211
TT T KQ+ +LLTG+PK DP +P
Sbjct: 36 TTFIRTDPSSFKQVVQLLTGIPK--NPTHQPDPRFP 69
>At1g51820.1 68414.m05841 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase GI:1321686 from (Arabidopsis thaliana); contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
contains protein kinase domain, Pfam:PF00069
Length = 885
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 323 GLRNAFVLNFGRMLKTAINNSAEISGLSKKSLKPELWMD 207
G RN F+LN+G LK I ++ + L P + D
Sbjct: 665 GTRNRFILNWGTRLKIVIESAQGLEYLHNGCKPPMVHRD 703
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 25.8 bits (54), Expect = 9.6
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +2
Query: 86 SKSWLTTTIFSTTKMKNKQINRLLTGLPKWRQRRRLKDPTYPSTV---LVLET 235
S S TTT + TK + + WR ++ L+ P YP VLET
Sbjct: 51 SASAATTTPATLTKPVGVNVGKGKWAPESWRTKKALQQPDYPDLAALEAVLET 103
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,979,460
Number of Sequences: 28952
Number of extensions: 103449
Number of successful extensions: 271
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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