Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20211
         (536 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    25   0.42 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   3.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.1  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   9.1  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 281 KTFLQLVHKATR-FVTFQFFRLSRST*AIIAYLYITFVI 168
           K F+++V  + R F   +FF L+R T   ++   ITF+I
Sbjct: 293 KMFVKIVDASCRNFTAARFFELNRRTILGVSNAVITFLI 331



 Score = 22.2 bits (45), Expect = 3.0
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
 Frame = -1

Query: 470 EQGVHEAIIGIPLYYL-CHRYTDKYKVFLQSVYRNIPFYHICHFHHICSRHSERISHLSC 294
           E  V   I+G   + L    Y   Y  F+   + ++    IC       ++ + + + + 
Sbjct: 414 ETFVWTQIMGAEFFKLYAVEYFQMYAQFIVGTFNSV---FICDLIEQKVKNIQMLVYQNE 470

Query: 293 KCKCKTFLQLVHKATRFVTFQFFRLSRST*AIIAYLYITFVI 168
             + K  L +++    F   +FF L+R T   +     TF+I
Sbjct: 471 AEEVKILLDVINHFPHFTAARFFDLNRKTILGVLNALFTFLI 512


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 429 LPLSSLHRQIQGFPS 385
           LP+ SLH  + G+P+
Sbjct: 49  LPVDSLHSSMAGYPA 63



 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 181 LPLSSLHRQIQGFPS 137
           LP+ SLH  + G+P+
Sbjct: 49  LPVDSLHSSMAGYPA 63


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 222 SKELKCDKSGCFVYQLKESLAFAFARKMGNSFAVTTANV 338
           S +++C +S    + L+ +  FA+  ++ N+   T +NV
Sbjct: 74  SIQIRCIESNMISFYLEATDDFAYFLEVSNNNFKTYSNV 112


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 298 LANANARLSFSWYTKQ 251
           + +    L+FSWY+K+
Sbjct: 215 VTSEKCNLTFSWYSKK 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,720
Number of Sequences: 336
Number of extensions: 3543
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)