Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20211
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    31   0.083
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    28   1.0  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   1.8  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   3.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   5.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.2  
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|...    25   7.2  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   7.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 31.5 bits (68), Expect = 0.083
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
 Frame = -1

Query: 446 IGIPLYYLCHRYTDKYKVFLQSVYRNIPFYHICHF---HHICSRHSERISH--LSCKCKC 282
           +G   YY     T  Y V   S+  +   +    F    HI   +   I+H  LS + + 
Sbjct: 299 VGYAGYYGMSLLTGSYAVLFASILAHAAQFGFLLFVENPHIERTYGTDINHARLSPRGED 358

Query: 281 KTF-LQLVHKATRFVTFQFFRLSRST*AIIAYLYITFVIATQTNTRFS 141
             F L   H    FV F F R+S     IIA LY  F+I   +N+ +S
Sbjct: 359 NEFELPPEHDLVGFVNFDFTRISDVALLIIA-LYSIFIILLSSNSHYS 405


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 360 LSHLPFSSHLQSSQRTNFPSFLQMQMQD 277
           +SHL F ++ Q +QR N  SFL+ +  +
Sbjct: 476 ISHLNFQNYRQENQRVNMRSFLRPERME 503



 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 112 LSHLPFSSHLQSSQRTNFPSFLK 44
           +SHL F ++ Q +QR N  SFL+
Sbjct: 476 ISHLNFQNYRQENQRVNMRSFLR 498


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 1   VAFVCRLKESHAFAFLRKMGNSFA---VTTANVMKMAN-VIKRNVSVY 132
           + ++  L + H F F   +GN F+    T+A+V+K+ N  +K  + VY
Sbjct: 26  IEYIADLHKQHGFKFAICLGNLFSHKRTTSADVVKLKNEKVKVPIPVY 73


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 281 CICICKKD--GKFVRCDDCKCDENGKC 355
           C+C  ++D    +V+CD C C ++  C
Sbjct: 23  CVCKSQEDIGDTWVQCDGCDCWQHASC 49



 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 33  CICIFKKD--GKFVRCDDCKCDENGKC 107
           C+C  ++D    +V+CD C C ++  C
Sbjct: 23  CVCKSQEDIGDTWVQCDGCDCWQHASC 49


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 244 LSHFSSLD*AGVHEQSSHTFILPLSSL 164
           L H S L+ +G+H+  S  F  P S++
Sbjct: 333 LQHASKLENSGIHQSKSSVFPQPASAM 359


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +3

Query: 33  CICIFKKDGKFVRCDDCKCDENGK-CDKTECF 125
           C  IF+K   F RC  C  D N   C K  CF
Sbjct: 96  CGHIFRKGEVFYRCKTCSVDSNSALCVK--CF 125


>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +3

Query: 24  GKSCICIFKKD----GKFVRCDDCKCDENGKCD 110
           G +CIC   K      + VRC  C C+    CD
Sbjct: 114 GSTCICRVPKSKLDKDQRVRCTHCGCNGCASCD 146



 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +2

Query: 272 GKSCICICKKD----GKFVRCDDCKCDENGKCD 358
           G +CIC   K      + VRC  C C+    CD
Sbjct: 114 GSTCICRVPKSKLDKDQRVRCTHCGCNGCASCD 146


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 303 MGNSFAVTTANVMKMANVIKRNVSVYRLKENLVFVCVAMTKVI*RYADDCFM--YSLLSL 476
           +G+S  V   N M   N+ K      + +E L+F+      ++ + ++ CF   + ++ L
Sbjct: 231 VGDSIVVCCLNTMGNLNICKTTEIFSKNREQLIFMGTPKFHLLPKDSNRCFFNPFEIIEL 290

Query: 477 K 479
           K
Sbjct: 291 K 291


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 348 PFSSHLQSSQRTNF-PSFLQMQMQDFPS 268
           P S HL+S  RT+F P+      QD PS
Sbjct: 357 PVSHHLKSPVRTSFPPASTTASKQDSPS 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,433
Number of Sequences: 5004
Number of extensions: 52557
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)