Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20211
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   8.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -2

Query: 217 AGVHE--QSSHTFILPLSSLHRQIQGFPSVCIQKHSVLSHLPFSS-HLQSSQRTNFPSFL 47
           +G+H+  Q     IL  + L   +Q   S+ +Q+     H   SS H  + +R  + S L
Sbjct: 69  SGIHQMQQLLQQHILSPTQLQSFMQQH-SLYLQQQQQQHHQDSSSEHASNQERFGYFSSL 127

Query: 46  KMQMHDFPSVG 14
           K   H F  +G
Sbjct: 128 KDHQHQFAELG 138


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 99  GKCDKTECFCIQTEGK 146
           G C+K  C C +T  K
Sbjct: 72  GHCEKVGCICRKTSFK 87



 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 347 GKCDKTECFCIQTEGK 394
           G C+K  C C +T  K
Sbjct: 72  GHCEKVGCICRKTSFK 87


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 9   CVPTEGKSCICI 44
           C P   KSCIC+
Sbjct: 480 CPPEIHKSCICV 491



 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 257 CVPTEGKSCICI 292
           C P   KSCIC+
Sbjct: 480 CPPEIHKSCICV 491


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 9   CVPTEGKSCICI 44
           C P   KSCIC+
Sbjct: 480 CPPEIHKSCICV 491



 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 257 CVPTEGKSCICI 292
           C P   KSCIC+
Sbjct: 480 CPPEIHKSCICV 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,898
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)