Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20206
         (441 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.079
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.1 bits (57), Expect = 0.079
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 28   VLENNRVYFKIMSTEDKQYLKPDNTK 105
            ++E   VY+K +ST+DK  +KP + K
Sbjct: 1230 IVEYYTVYYKPVSTDDKTEVKPTSQK 1255


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
          protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 93 GLQVLFVLGGHDLEVNSVVFQHG 25
          GL +L +LG      N VV  HG
Sbjct: 5  GLALLSILGIVSAATNKVVCYHG 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,987
Number of Sequences: 336
Number of extensions: 1915
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)