Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20206
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 0.42
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.3
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 1.3
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 2.2
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 3.0
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 5.2
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 5.2
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 5.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 6.8
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 6.8
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 6.8
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 24 9.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 24 9.0
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.42
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 192 FVHGGLKVPVVFEGVSGAITVDDTVIT 112
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 317 LGITGNFSAVPQGFTVFVGGHSSSSVITLLYSRL*TKNMTSLSYMEGS 174
L +T +FS +PQ +G H ++SV + +K ++S M S
Sbjct: 474 LAVTPSFSPIPQQSNKSIGNHKNTSVANVSSKVANSKFERNISMMSNS 521
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.3
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 26 PCWKTTEFTSRSCPPRTNST*SPITRKVLVMTVSSTVIAPLTPSNTTGT 172
P T+ TS S PP NS +P+T V + SST P P++T+ T
Sbjct: 279 PTTSTSCTTSTSIPPTGNS-TTPVTPTVPPTSTSSTSTPP-PPASTSST 325
Score = 27.1 bits (57), Expect = 1.3
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 26 PCWKTTEFTSRSCPPRTNST*SPITRKVLVMTVSSTVIAPLTPSNTTGT 172
P T+ TS S PP NS +P+T V + SST P P++T+ T
Sbjct: 333 PSTSTSCTTSTSIPPTGNS-TTPVTPTVPPTSTSSTSTPP-PPASTSST 379
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 121 RIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEEWPPTKTVK 279
RI Y D TF Y + Y+S + F+ +R +S W TK K
Sbjct: 315 RIDYSDPNNKTFNPEIYNDTDFYQSLLKDFINSRMADSTRDGTVRWMATKKQK 367
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +1
Query: 112 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 246
SDDR+ GD+ + +Y++ +MYE ++ Y YN V+ L
Sbjct: 84 SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 3.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 267 RWRPFFIKCHNTVVLSVVDEEHDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRV 97
R P C ++ VD HD+ H LK + VSG++ + D FR+
Sbjct: 452 RLEPMEADCFFKQLMRGVDYLHDMGVAHRDLKPENLLLTVSGSLKITDFGNGECFRM 508
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +1
Query: 10 SWKFTPVLENNRVYFKIMSTEDKQYLKPDNTKGSSDDRIIYGDSTAD 150
+WK ++E R+++ KQYL ++ + D ++ D +D
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKDNRDLKVFADYGSD 584
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 308 LSPTFCMVHXPLLSVVVKGSTD*YVENQI 394
LS FCM H PLL +++ + + N +
Sbjct: 953 LSNNFCMEHLPLLITILEKCDNPIIRNNL 981
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 257 HSS-SSVITLLYSRL*TKNMTSLSYMEGSRY 168
HSS SS + +L S K+ T LSYM+ SRY
Sbjct: 186 HSSLSSWMMILESSKEIKDSTLLSYMQISRY 216
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 165 VVFEGVSGAITVDDTVITRTFRVIGLQVLFVLGGHDLEVNSVVFQH 28
++ EG+S +V++T F V+ ++ DLEV S Q+
Sbjct: 1383 MIKEGLSSKPSVNETFSKYVFPVLFAYYDIIMSAEDLEVRSRALQN 1428
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 118 DRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVM 240
D ++ D A +K WY + SD+ VY+ E+ V+
Sbjct: 161 DTVLQADCGA-VYKISWYTTYIAWASDLGITVYSTEFGKVL 200
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.6 bits (51), Expect = 6.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 87 QVLFVLGGHDLEVNSVVFQHGGK 19
+V +V GH+ ++ S+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 16 KFTPVLENNRVYFKIMS---TEDKQYLKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSM 186
+F + N+ VY +M+ + DK++ + + ++ +G + T KH Y + ++
Sbjct: 443 EFEQMWRNSSVYADLMAEMESYDKRWTETTPASSEAPEKDNFGSDISATTKHELYRQSAV 502
Query: 187 YE 192
E
Sbjct: 503 AE 504
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.2 bits (50), Expect = 9.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 KHHWYLEPSMYESDVMFFVYNREYNSVMTLDEEWPPTKTVKPWGTAEK 300
K H YL S +ES ++ Y YNSV+ L++ P + G+A K
Sbjct: 1207 KWHKYLT-SYFESCLLSTEYMHIYNSVIILEKILPCFPLIIESGSALK 1253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,644
Number of Sequences: 5004
Number of extensions: 32312
Number of successful extensions: 115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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