Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20206
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0093 + 13536684-13536782,13537055-13537057,13537626-135376... 30 0.95
08_02_0272 + 15189617-15190276,15190361-15191107 29 1.3
06_01_1082 - 8847795-8848033,8848511-8848724 28 2.9
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 3.8
08_02_0932 - 22710818-22711033,22711375-22711581,22712282-22712545 27 5.1
03_03_0230 - 15623648-15623653,15624333-15624383,15624477-156245... 27 5.1
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 27 6.7
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 27 6.7
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 27 6.7
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 27 6.7
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 27 6.7
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 27 6.7
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 27 8.8
11_04_0314 - 16277292-16277927,16278385-16278514,16278934-162792... 27 8.8
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 27 8.8
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369... 27 8.8
>12_02_0093 +
13536684-13536782,13537055-13537057,13537626-13537654,
13539481-13539572,13539979-13540049,13540178-13540266,
13540896-13541019,13541111-13541394,13541831-13541960,
13542482-13543111
Length = 516
Score = 29.9 bits (64), Expect = 0.95
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 297 LRCAPRLHGLRWRPFFIKCHNTVVLSVVDEEHDVAFVHGGLKVPVV-FEGVSGAITVDDT 121
LRC H LR++P +K N +V + E H ++ +H ++ ++ F G T ++
Sbjct: 216 LRCRVNYHALRFKPHIMKISNEIVNKLRSEGHFMS-IHLRFEMDMLAFAGCIDIFTPEEQ 274
Query: 120 VITRTFR 100
I +R
Sbjct: 275 KILIEYR 281
>08_02_0272 + 15189617-15190276,15190361-15191107
Length = 468
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 204 HDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRVIGLQVLFVLGGHDLEVNSVVF 34
HD++F HG L++P + VDDT + F ++ + L G + EV + VF
Sbjct: 300 HDISFRHGALRIP--------RLAVDDTTEHKLFSLMAFEQLHGAGAN--EVTAYVF 346
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 166 WYLEPSMYESDVMFFVYNREYNSV 237
W + Y DV+ F YN+EY+ V
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDV 82
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 31 LENNRVYFKIMSTEDKQYLKPDNT 102
+EN+ + F +M+ D QYL P+NT
Sbjct: 374 MENHGIGFLLMAYNDVQYLVPNNT 397
>08_02_0932 - 22710818-22711033,22711375-22711581,22712282-22712545
Length = 228
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 181 SMYESDVMFFVYNRE-YNSVMTLDEEWPPTKTVKPW 285
SM+E+DV+ F+ +R Y+ EW ++V+ W
Sbjct: 136 SMHEADVLHFILDRPGYDDKCWEPTEWEEARSVQYW 171
>03_03_0230 -
15623648-15623653,15624333-15624383,15624477-15624546,
15624646-15624848,15625011-15625116,15625228-15625295,
15625410-15625453,15628360-15628602,15629482-15629691,
15630207-15630287,15630289-15630355,15632167-15632386,
15632534-15632646,15634322-15634416,15634509-15634629
Length = 565
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -1
Query: 228 VLSVVDEEHDVAFVHGGLKVPVVFEG---VSGAITVDDTVITRTFRVIGLQVLFVLGGHD 58
++ V+ E DV V GG+ V V + ++G ++VDD +I +IG + G D
Sbjct: 132 IIVEVEVEVDVG-VDGGIIVEVEVDDSIILNGKVSVDDDIIIEVVDIIGRHRMLQFGPSD 190
Query: 57 LEV 49
V
Sbjct: 191 RSV 193
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVM 204
+KP T GSS R + G T D + Y PS+ ES M
Sbjct: 258 VKPKETTGSSSSRSVAGGHTIDKY----YKPPSIEESASM 293
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVM 204
+KP T GSS R + G T D + Y PS+ ES M
Sbjct: 136 VKPKETTGSSSSRSVAGGHTIDKY----YKPPSIEESASM 171
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVM 204
+KP T GSS R + G T D + Y PS+ ES M
Sbjct: 140 VKPKETTGSSSSRSVAGGHTIDKY----YKPPSIEESASM 175
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVM 204
+KP T GSS R + G T D + Y PS+ ES M
Sbjct: 283 VKPKETTGSSSSRSVAGGHTIDKY----YKPPSIEESASM 318
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVM 204
+KP T GSS R + G T D + Y PS+ ES M
Sbjct: 263 VKPKETTGSSSSRSVAGGHTIDKY----YKPPSIEESASM 298
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVM 204
+KP T GSS R + G T D + Y PS+ ES M
Sbjct: 136 VKPKETTGSSSSRSVAGGHTIDKY----YKPPSIEESASM 171
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYES 195
+KP T GSS R + G T D + Y PS+ ES
Sbjct: 258 VKPKETTGSSSSRSVAGGHTIDKY----YKPPSIEES 290
>11_04_0314 -
16277292-16277927,16278385-16278514,16278934-16279217,
16279308-16279431,16280442-16280530,16280630-16280706,
16280790-16280922,16282131-16282211,16282372-16282539
Length = 573
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 297 LRCAPRLHGLRWRPFFIKCHNTVVLSVVDEEH 202
LRC H LR++P +K + +V + E H
Sbjct: 271 LRCRVNYHALRFKPHIMKTSSEIVNKLRTEGH 302
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 125 IRSSLEPFVLSGFRYCLSSVDMILK*TLLFSNTG 24
IRSS F LSG Y +S +D + L+ TG
Sbjct: 515 IRSSRHEFTLSGHGYIVSCLDYFTRGNQLYMITG 548
>10_08_0848 +
21035446-21035461,21035742-21036233,21036400-21036956,
21037084-21037539,21037886-21038302
Length = 645
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYES 195
+KP T GSS R + G T D + Y PS+ ES
Sbjct: 136 VKPKETTGSSSSRSVAGGHTIDKY----YKPPSIEES 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,718,466
Number of Sequences: 37544
Number of extensions: 207984
Number of successful extensions: 608
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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